Browse Element(s) Details


Os.12373.1.S1_at

Description gb:AK071203.1
DB_XREF= gi:32981226
TID=Os.12373.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12373 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-042-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023083E07, full insert sequence.
FL= gb:AK104843.1 gb:AK071203.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3574011/1112-oxophytodienoate reductase 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35700Os.50552.1.S1_at10/118+22389525..22396040Leucine Rich Repeat family protein, expressed
LOC_Os08g35710Os.28002.1.S1_at10/118+22397201..22399637expressed protein
LOC_Os08g35720Os.8451.1.S1_at3/118+22404769..22408471transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g35730OsAffx.17349.1.S1_at11/118+22410580..22411410hypothetical protein
LOC_Os08g35740Os.12373.1.S1_at11/118+22414347..2241788512-oxophytodienoate reductase 3, putative, expressed
LOC_Os08g35750OsAffx.29541.1.S1_at11/118+22420499..22421158Germin-like protein 1 precursor, putative, expressed
LOC_Os08g35760Os.3380.1.S1_at11/118+22425165..22426202Auxin-binding protein ABP20 precursor, putative, expressed
LOC_Os08g35770OsAffx.17350.1.S1_at11/118+22431171..22431482hypothetical protein
LOC_Os08g35780NANA8+22437405..22438043transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g35790NANA8+22440125..22440625hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009695biological_processjasmonic acid biosynthesis
GO:0010150biological_processleaf senescence
GO:0010193biological_processresponse to ozone
GO:0016629molecular_function12-oxophytodienoate reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12373.1.S1_at--151--7611Chr08:22417345..22417369 (25 bp)
GGGCACGTACCAGGGCACATTCATG
LOC_Os08g35740
Os.12373.1.S1_at--1158--2071Chr08:22417361..22417385 (25 bp)
ACATTCATGTGCAGTGGCGGCTACA
LOC_Os08g35740
Os.12373.1.S1_at--841--6991Chr08:22417438..22417462 (25 bp)
GTACGGGCGGCTCTTCATATCAAAC
LOC_Os08g35740
Os.12373.1.S1_at--24--151Chr08:22417454..22417478 (25 bp)
ATATCAAACCCGGACCTGGTCGAGC
LOC_Os08g35740
Os.12373.1.S1_at--439--9391Chr08:22417542..22417566 (25 bp)
TCGTGGGTTACACGGACTATCCGTT
LOC_Os08g35740
Os.12373.1.S1_at--306--9451Chr08:22417569..22417593 (25 bp)
TCGGACAGCCTAAGTCGCGGATGTA
LOC_Os08g35740
Os.12373.1.S1_at--556--5131Chr08:22417653..22417677 (25 bp)
GCAACGGTGAGGTGATTTAGCTTAT
LOC_Os08g35740
Os.12373.1.S1_at--318--4731Chr08:22417735..22417759 (25 bp)
GCTGATTCAGTAGCTACTCTAGCCT
LOC_Os08g35740
Os.12373.1.S1_at--1008--9531Chr08:22417752..22417776 (25 bp)
TCTAGCCTATGTAAACCTTGGGTCA
LOC_Os08g35740
Os.12373.1.S1_at--640--7691Chr08:22417771..22417795 (25 bp)
GGGTCATCAGCACAGATTGTATCTA
LOC_Os08g35740
Os.12373.1.S1_at--883--5031Chr08:22417832..22417856 (25 bp)
GCAGATTTATGCATCGTACCAGTTA
LOC_Os08g35740
Target Sequence 
GGGCACGTACCAGGGCACATTCATGTGCAGTGGCGGCTACACGCGGGAGCTTGGGTTGGAAGCAGTGGAGAGCGGCGATG
CCGACCTGGTGTCGTACGGGCGGCTCTTCATATCAAACCCGGACCTGGTCGAGCGGTTCAGGCTGAACGCCGGGCTGAAC
AAGTACGTGCGNAAGACATTCTACACGCCCGATCCTGTCGTGGGTTACACGGACTATCCGTTCCTCGGACAGCCTAAGTC
GCGGATGTAAATGTACTGCGGGATAAGTAAATCAAGGATACGATTGTGTATTGTAAGGAAAATAAAGGGCAACGGTGAGG
TGATTTAGCTTATTTTTGGGACCTAATTTGACGGTAATTTATTCTTTCACCAAATCTGATATGATCCATTGCTGATTCAG
TAGCTACTCTAGCCTATGTAAACCTTGGGTCATCAGCACAGATTGTATCTATATGTGTATTGCATAATGTTTCATATCAG
TTGTCTAGCAGATTTATGCATCGTACCAGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12373.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis