Browse Element(s) Details


Os.46706.1.S1_x_at

Description gb:BI812545
DB_XREF= gi:16578450
DB_XREF=F001B09
CLONE=F001B09
TID=Os.46706.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46706 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0047B19.26), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1539010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g15340OsAffx.32166.4.S1_at11/1110+7800997..7804746retrotransposon protein, putative, unclassified, expressed
LOC_Os10g15340Os.36736.1.S1_x_at1/1110+7800997..7804746retrotransposon protein, putative, unclassified, expressed
LOC_Os10g15340OsAffx.18435.1.S1_x_at1/1110+7800997..7804746retrotransposon protein, putative, unclassified, expressed
LOC_Os10g15360OsAffx.24744.4.A1_at11/1110+7819182..7819625retrotransposon protein, putative, unclassified
LOC_Os10g15370OsAffx.8327.1.S1_at10/1110+7823635..7823927expressed protein
LOC_Os10g15390Os.17285.2.S1_x_at10/1110+7824172..7834913expressed protein
LOC_Os10g15390Os.46706.1.S1_x_at10/1110+7824172..7834913expressed protein
LOC_Os10g16390NANA10+7839603..7843537retrotransposon protein, putative, unclassified
LOC_Os10g16400NANA10+7843889..7844794hypothetical protein
LOC_Os10g16410OsAffx.8326.1.S1_x_at11/1110+7847166..7849598hypothetical protein
LOC_Os10g16410OsAffx.8326.1.S1_at11/1110+7847166..7849598hypothetical protein
LOC_Os10g16419OsAffx.8598.1.S1_at1/1110+7855526..7857188NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46706.1.S1_x_at--196--9531Chr10:7833628..7833992 (25 bp)
TCTTAATTTAGTGAACCGGCGCCAA
LOC_Os10g15390
Os.46706.1.S1_x_at--25--4271NONE
CCGGCGCCAAAAGGAAGCTGAACTG
NONE
Os.46706.1.S1_x_at--342--6771Chr10:7834010..7834034 (25 bp)
GTTACTTGAAGAGGAGCTCGCTCGA
LOC_Os10g15390
Os.46706.1.S1_x_at--191--8091Chr10:7834022..7834046 (25 bp)
GGAGCTCGCTCGAAGAGTTGAAGAA
LOC_Os10g15390
Os.46706.1.S1_x_at--205--8091Chr10:7834067..7834091 (25 bp)
GGACCGTTTGAACTCCGAGGACATC
LOC_Os10g15390
Os.46706.1.S1_x_at--1055--2371Chr10:7834104..7834128 (25 bp)
AAACGGCGAGTTGAGGAAGGCATCA
LOC_Os10g15390
Os.46706.1.S1_x_at--106--6311Chr10:7834140..7834164 (25 bp)
GATGAGGTTGATGCTCAGCTACAAA
LOC_Os10g15390
Os.46706.1.S1_x_at--363--1791Chr10:7834780..7834804 (25 bp)
ACCGTTGATTTGGTTTCAGTATTAT
LOC_Os10g15390
Os.46706.1.S1_x_at--398--151Chr10:7834800..7834824 (25 bp)
ATTATGATCTGTTTCATCTGACAAG
LOC_Os10g15390
Os.46706.1.S1_x_at--922--2811Chr10:7834822..7834846 (25 bp)
AAGATTAGGCATACTCGCTCTGTCT
LOC_Os10g15390
Os.46706.1.S1_x_at--410--9471Chr10:7834840..7834872 (25 bp)
TCTGTCTCAAGATATTTTGGTGGAT
LOC_Os10g15390
Target Sequence 
TCTTAATTTAGTGAACCGGCGCCAAAAGGAAGCTGAACTGAAGTTACTTGAAGAGGAGCTCGCTCGAAGAGTTGAAGAAT
CTATAAGAAAAAATGTTGAGGACCGTTTGAACTCCGAGGACATCAAAAATGAAATAAAACGGCGAGTTGAGGAAGGCATC
AAGCAGTTATTTGATGAGGTTGATGCTCAGCTACAAAAAGAGAANGGAAACGGCTNCTGCNGTGAAGCCAGGCATAAAGC
TGANACANGAAAGAAGAGAGAGGGAGGAGTTGGATAGGATGCTTGAGGAGAATCGGCGAAAAGTAGAGGAAGCTCAAAGA
AAAGAAGCACTGGAACANCAGCAGAAAGAGCTAGANCGATTTTTAGANTTGGAAAGAATTCNAAAGCAAAGGGAAGACGC
GATNCGTAGAAAGAAGATAGAGGAGGAGGAAGATAGAGCTAATCAGATGAAATTACTTGGGAAGAATAACCGTTGATTTG
GTTTCAGTATTATGATCTGTTTCATCTGACAAGATTAGGCATACTCGCTCTGTCTCAAGATATTTTGGTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46706.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis