Browse Element(s) Details


OsAffx.20576.1.S1_at

Description gb:NM_195568.1
DB_XREF= gi:37532495
TID=OsAffx.20576.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0034E23.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1643011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g16390NANA10+7839603..7843537retrotransposon protein, putative, unclassified
LOC_Os10g16400NANA10+7843889..7844794hypothetical protein
LOC_Os10g16410OsAffx.8326.1.S1_x_at11/1110+7847166..7849598hypothetical protein
LOC_Os10g16410OsAffx.8326.1.S1_at11/1110+7847166..7849598hypothetical protein
LOC_Os10g16419OsAffx.8598.1.S1_at1/1110+7855526..7857188NA
LOC_Os10g16430OsAffx.20576.1.S1_at11/1110+7860945..7861900hypothetical protein
LOC_Os10g16440Os.3300.1.S1_s_at9/1110+7862758..7869411CUE domain containing protein, expressed
LOC_Os10g16450NANA10+7873934..7875319retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16460Os.1709.1.S1_x_at11/1110+7875694..7879401retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16460Os.31497.2.S1_x_at1/1110+7875694..7879401retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16470NANA10+7880149..7882884hypothetical protein
LOC_Os10g16480NANA10+7885474..7892223retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20576.1.S1_at--716--5071Chr10:7861578..7861602 (25 bp)
GCAGCCGCATCAAGAATGCGCTGGG
LOC_Os10g16430
OsAffx.20576.1.S1_at--297--2951Chr10:7861549..7861573 (25 bp)
AAGGCGAGGCGGTTGTCATCGTCAG
LOC_Os10g16430
OsAffx.20576.1.S1_at--121--10471Chr10:7861465..7861489 (25 bp)
TTACCCGGGCGTGGACGGCAGCTGA
LOC_Os10g16430
OsAffx.20576.1.S1_at--448--5071Chr10:7861448..7861472 (25 bp)
GCAGCTGATGACATCGGCGGAGATC
LOC_Os10g16430
OsAffx.20576.1.S1_at--285--1611Chr10:7861446..7861470 (25 bp)
AGCTGATGACATCGGCGGAGATCAT
LOC_Os10g16430
OsAffx.20576.1.S1_at--845--611Chr10:7861423..7861447 (25 bp)
ATGCGGCAGCAGATCCGCGTCACTG
LOC_Os10g16430
OsAffx.20576.1.S1_at--412--3411Chr10:7861417..7861441 (25 bp)
CAGCAGATCCGCGTCACTGAGCAGA
LOC_Os10g16430
OsAffx.20576.1.S1_at--440--9691Chr10:7861404..7861428 (25 bp)
TCACTGAGCAGAACAACGCGCGGCT
LOC_Os10g16430
OsAffx.20576.1.S1_at--67--9991Chr10:7861278..7861382 (25 bp)
TATCGTCGGGCAGGTGAAGCTCCTC
LOC_Os10g16430
OsAffx.20576.1.S1_at--396--531Chr10:7861154..7861178 (25 bp)
ATCGACACCGCTAAGAACTCCAACG
LOC_Os10g16430
OsAffx.20576.1.S1_at--22--4851Chr10:7861145..7861169 (25 bp)
GCTAAGAACTCCAACGCCATGCGCA
LOC_Os10g16430
Target Sequence 
GCAGCCGCATCAAGAATGCGCTGGGGCTCAAGGCGAGGCGGTTGTCATCGTCAGCGGTGGCGGCGACGCAGCCGATGATG
GTGCGCACGCTGAGCCAGACATTGGGGCCGGCGTTACCCGGGCGTGGACGGCAGCTGATGACATCGGCGGAGATCATGCG
GCAGCAGATCCGCGTCACTGAGCAGAACAACGCGCGGCTGCGGCGGACGCTGATGCGCGCTATCGTCGGGCAGGTGAAGC
TCCTCGAGGCCGGCCTCATCCTCCACCCTTCCCTCCCTCTCGACCGCCTCAACTCCGCCGTGCTCCGCTTCCGCGAGGTG
ATGCGCGCCACCGAGATCCGCGCCATCGACACCGCTAAGAACTCCAACGCCATGCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20576.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis