Browse Element(s) Details


OsAffx.15585.1.S1_at

Description tigr:9634.m02344
TID=OsAffx.15585.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2376011/11Acyl-coenzyme A oxidase 4, peroxisomal, putative
LOC_Os02g362301/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g23710OsAffx.15583.1.S1_at8/116+13853886..13859640hypothetical protein
LOC_Os06g23710OsAffx.27828.1.S1_at3/116+13853886..13859640hypothetical protein
LOC_Os06g23720NANA6+13862323..13864047hypothetical protein
LOC_Os06g23730OsAffx.8326.1.S1_x_at1/116+13864855..13868093Transposable element protein, putative, Retrotrans_gag
LOC_Os06g23740OsAffx.27792.1.S1_at11/116+13870664..13872424hypothetical protein
LOC_Os06g23750OsAffx.27793.1.S1_at11/116+13876623..13877189hypothetical protein
LOC_Os06g23760OsAffx.15585.1.S1_at11/116+13882251..13883185Acyl-coenzyme A oxidase 4, peroxisomal, putative
LOC_Os06g23770OsAffx.27794.1.S1_at11/116+13884411..13887924expressed protein
LOC_Os06g23770Os.22618.1.S1_at11/116+13884411..13887924expressed protein
LOC_Os06g23770Os.22618.2.S1_x_at2/116+13884411..13887924expressed protein
LOC_Os06g23780OsAffx.15586.1.S1_at10/116+13891472..13896686Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os06g23790NANA6+13900302..13900942expressed protein
LOC_Os06g23800OsAffx.16039.2.S1_at10/116+13904083..13908019flavin-containing monooxygenase family protein, putative, expressed
LOC_Os06g23800Os.7414.1.S1_at10/116+13904083..13908019flavin-containing monooxygenase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006635biological_processfatty acid beta-oxidation
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0046459biological_processshort-chain fatty acid metabolism
GO:0005777cellular_componentperoxisome
GO:0003997molecular_functionacyl-CoA oxidase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15585.1.S1_at--715--7691Chr06:13882383..13882407 (25 bp)
GGGTCTTCAGAGCTCAGGTCACCGA
LOC_Os06g23760
OsAffx.15585.1.S1_at--805--1011Chr06:13882398..13882422 (25 bp)
AGGTCACCGACTTTGAACTTGTCCA
LOC_Os06g23760
OsAffx.15585.1.S1_at--1159--10251Chr06:13882409..13882433 (25 bp)
TTTGAACTTGTCCATAGCTTGCCCC
LOC_Os06g23760
OsAffx.15585.1.S1_at--938--1552Chr06:13882435..13882459 (25 bp)
AGCTTACACCAGCTGCGTCGACCTT
LOC_Os06g23760
OsAffx.15585.1.S1_at--115--4991Chr06:13882718..13882742 (25 bp)
GCATCCAACTATTGCCAGCTTGATG
LOC_Os06g23760
OsAffx.15585.1.S1_at--529--4411Chr06:13882731..13882755 (25 bp)
GCCAGCTTGATGAACTGCTGACAGA
LOC_Os06g23760
OsAffx.15585.1.S1_at--476--451Chr06:13882767..13882791 (25 bp)
ATCTACAAATCAAAGTCCGGCAGTT
LOC_Os06g23760
OsAffx.15585.1.S1_at--105--8051Chr06:13882944..13882968 (25 bp)
GGAGAAGGCCGAATTCCCGTTTCAT
LOC_Os06g23760
OsAffx.15585.1.S1_at--604--11Chr06:13882956..13882980 (25 bp)
ATTCCCGTTTCATCTTATTCCAAAG
LOC_Os06g23760
OsAffx.15585.1.S1_at--783--10411Chr06:13882970..13882994 (25 bp)
TTATTCCAAAGATGAGCACTCTCGG
LOC_Os06g23760
OsAffx.15585.1.S1_at--1039--5931Chr06:13882983..13883007 (25 bp)
GAGCACTCTCGGAATTGCTGGAGGA
LOC_Os06g23760
Target Sequence 
GGGTCTTCAGAGCTCAGGTCACCGACTTTGAACTTGTCCATAGCTTGCCCCCAGCTTACACCAGCTGCGTCGACCTTTCC
AGCAGCAGCATCCAACTATTGCCAGCTTGATGAACTGCTGACAGAAGAGGAAAAGGATCTACAAATCAAAGTCCGGCAGT
TTATGGAGAATGAAGTTGCACCAATAATATCCAAGTTTTGGGAGAAGGCCGAATTCCCGTTTCATCTTATTCCAAAGATG
AGCACTCTCGGAATTGCTGGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15585.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis