Browse Element(s) Details


OsAffx.16039.2.S1_at

Description tigr:9634.m02348
TID=OsAffx.16039.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2380010/11flavin-containing monooxygenase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g23760OsAffx.15585.1.S1_at11/116+13882251..13883185Acyl-coenzyme A oxidase 4, peroxisomal, putative
LOC_Os06g23770OsAffx.27794.1.S1_at11/116+13884411..13887924expressed protein
LOC_Os06g23770Os.22618.1.S1_at11/116+13884411..13887924expressed protein
LOC_Os06g23770Os.22618.2.S1_x_at2/116+13884411..13887924expressed protein
LOC_Os06g23780OsAffx.15586.1.S1_at10/116+13891472..13896686Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os06g23790NANA6+13900302..13900942expressed protein
LOC_Os06g23800OsAffx.16039.2.S1_at10/116+13904083..13908019flavin-containing monooxygenase family protein, putative, expressed
LOC_Os06g23800Os.7414.1.S1_at10/116+13904083..13908019flavin-containing monooxygenase family protein, putative, expressed
LOC_Os06g23810OsAffx.15588.1.S1_at11/116+13914102..13914752hypothetical protein
LOC_Os06g23820NANA6+13922592..13924427retrotransposon protein, putative, unclassified
LOC_Os06g23830Os.28943.1.S1_x_at3/116+13924577..13925824retrotransposon protein, putative, unclassified
LOC_Os06g23840NANA6+13926446..13931297retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0004497molecular_functionmonooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16039.2.S1_at--544--5771Chr06:13907123..13907147 (25 bp)
GACGATGGCGTGTACTTGACCGGCA
LOC_Os06g23800
OsAffx.16039.2.S1_at--925--4472Chr06:13903542..13903689 (25 bp)
GCCGGCGGGAACACGTGCTTGAACA
NONE
OsAffx.16039.2.S1_at--655--2471Chr06:13907048..13907072 (25 bp)
AACACGTGCTTGAACAGCGGCCCGA
LOC_Os06g23800
OsAffx.16039.2.S1_at--388--2931Chr06:13906753..13906777 (25 bp)
AAGGACATCGCGTTGGTCCTCATCG
LOC_Os06g23800
OsAffx.16039.2.S1_at--601--4651NONE
GCGTCGCCAAGGAGCATCAAACGCT
NONE
OsAffx.16039.2.S1_at--980--9811Chr06:13905570..13905594 (25 bp)
TAAACCTTGTGCTAGGCAAGTACTT
LOC_Os06g23800
OsAffx.16039.2.S1_at--42--10091Chr06:13905558..13905582 (25 bp)
TAGGCAAGTACTTCACTTCCATCCT
LOC_Os06g23800
OsAffx.16039.2.S1_at--397--571Chr06:13905475..13905562 (25 bp)
ATCCTCATCTTTGCGAGCTACTATG
LOC_Os06g23800
OsAffx.16039.2.S1_at--194--371Chr06:13905295..13905424 (25 bp)
ATCAAGCGAGGTTGGAAGCGGCCCA
LOC_Os06g23800
OsAffx.16039.2.S1_at--605--3331Chr06:13905254..13905278 (25 bp)
CACTCTGCAGGTGGACTTTGGTGTC
LOC_Os06g23800
OsAffx.16039.2.S1_at--441--3691Chr06:13905239..13905263 (25 bp)
CTTTGGTGTCCTTGTGGTGTATGTA
LOC_Os06g23800
Target Sequence 
GACGATGGCGTGTACTTGACCGGCACCTTCCTCGGGACGCCGACGAACGACAGCGCCGGCGCCAACGCCGGCGGGAACAC
GTGCTTGAACAGCGGCCCGACCACCGGGCACTACTCGCAGCCCAGCATGCCAACCATCAAAGGAATGGAGGTGTGGAGGC
GGCGGCAGCTGCACAGCCACTCGTACCGGCTGCCAGAGCCGTTCCGCGACGAGGTGGTTGTCATGGTGGGCTGCGGCGAA
AACGGCAAGGACATCGCGTTGGTCCTCATCGGCGTCGCCAAGGAGCATCAAACGCTCCAATTAAGCTGTTTGCATCGTTT
CCTGCCCAAGGTCCTAAATCTTATCTTAAGATTGCAAGAGCACTTCAGATGGGTAAACCTTGTGCTAGGCAAGTACTTCA
CTTCCATCCTCATCTTTGCGAGCTACTATGTGACCATTGGCACTCTGATAGACAGGCCAGCCAAGCTTTCTCTGGATGAC
ATCAAGCGAGGTTGGAAGCGGCCCAAGTACAATGTCACTGCCACTCTGCAGGTGGACTTTGGTGTCCTTGTGGTGTATGT
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16039.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis