Browse Element(s) Details


Os.8762.1.S1_at

Description gb:AK069818.1
DB_XREF= gi:32979842
TID=Os.8762.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8762 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023028K01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023028K01, full insert sequence.
FL= gb:AK069818.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2563011/11Sulfite oxidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g25580OsAffx.22699.1.S1_x_at4/1112+14797349..14801893retrotransposon protein, putative, unclassified
LOC_Os12g25590Os.24831.1.S1_x_at10/1112+14807082..14809905retrotransposon protein, putative, unclassified
LOC_Os12g25590Os.24831.3.S1_x_at7/1112+14807082..14809905retrotransposon protein, putative, unclassified
LOC_Os12g25590Os.53142.1.S1_at2/1112+14807082..14809905retrotransposon protein, putative, unclassified
LOC_Os12g25590Os.24831.4.S1_x_at1/1112+14807082..14809905retrotransposon protein, putative, unclassified
LOC_Os12g25590Os.24831.3.S1_s_at1/1112+14807082..14809905retrotransposon protein, putative, unclassified
LOC_Os12g25600Os.24831.3.S1_s_at11/1112+14814395..14817138retrotransposon protein, putative, unclassified
LOC_Os12g25600Os.24831.1.S1_x_at10/1112+14814395..14817138retrotransposon protein, putative, unclassified
LOC_Os12g25600Os.24831.3.S1_x_at8/1112+14814395..14817138retrotransposon protein, putative, unclassified
LOC_Os12g25610NANA12+14819296..14820579retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25630Os.8762.1.S1_at11/1112+14824690..14827948Sulfite oxidase, putative, expressed
LOC_Os12g25630Os.7414.1.S1_at1/1112+14824690..14827948Sulfite oxidase, putative, expressed
LOC_Os12g25640OsAffx.19823.1.S1_at11/1112+14835886..14842772SAP domain containing protein, expressed
LOC_Os12g25640Os.9939.1.S1_at11/1112+14835886..14842772SAP domain containing protein, expressed
LOC_Os12g25640Os.50043.1.A1_at1/1112+14835886..14842772SAP domain containing protein, expressed
LOC_Os12g25650OsAffx.19824.1.S1_at10/1112+14844949..14846006hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006790biological_processsulfur metabolism
GO:0009416biological_processresponse to light stimulus
GO:0042128biological_processnitrate assimilation
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0008134molecular_functiontranscription factor binding
GO:0008482molecular_functionsulfite oxidase activity
GO:0008940molecular_functionnitrate reductase activity
GO:0009703molecular_functionnitrate reductase (NADH) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8762.1.S1_at--912--5151Chr12:14825383..14825407 (25 bp)
GCAAGACTTGGTTCGGTGCTGTCCG
LOC_Os12g25630
Os.8762.1.S1_at--1046--1091Chr12:14825308..14825332 (25 bp)
AGTGGGCTTGGGTTCTCTTCAAGAC
LOC_Os12g25630
Os.8762.1.S1_at--14--9031Chr12:14825093..14825117 (25 bp)
TGCAACCTGAGAGCGTGGAGACCAT
LOC_Os12g25630
Os.8762.1.S1_at--985--1331Chr12:14825058..14825082 (25 bp)
AGAGGGATCCTGAACACCTGCTGGC
LOC_Os12g25630
Os.8762.1.S1_at--581--8791Chr12:14825029..14825053 (25 bp)
TGTTCGCCTTCTGACAATACACAAC
LOC_Os12g25630
Os.8762.1.S1_at--428--3131Chr12:14824948..14824972 (25 bp)
AATTTACCGCTCTATGTTGCACTGT
LOC_Os12g25630
Os.8762.1.S1_at--1087--9291Chr12:14824920..14824944 (25 bp)
TCCGCTTTCGGATCTGCATTGGAGA
LOC_Os12g25630
Os.8762.1.S1_at--135--3032Chr12:14824868..14824892 (25 bp)
AATGCTGGCTGACTTGCTTGGATGC
LOC_Os12g25630
Os.8762.1.S1_at--1053--5191Chr12:14824841..14824865 (25 bp)
GAATAAAATCCCGTGCCACCTTGTT
LOC_Os12g25630
Os.8762.1.S1_at--670--4411Chr12:14824827..14824851 (25 bp)
GCCACCTTGTTATCCTATTCTTTTT
LOC_Os12g25630
Os.8762.1.S1_at--1085--8231Chr12:14824772..14824796 (25 bp)
GGCACAGGCTAGATCAACCTCATTT
LOC_Os12g25630
Target Sequence 
GCAAGACTTGGTTCGGTGCTGTCCGGTACCAAAAGGAAGGTGTACCATACGTCGCAGGTGACATAAGTAGTGACAAGTGG
GCTTGGGTTCTCTTCAAGACTGTTATCGATGTGAAAGGTGACACGGAGGTTATCGTAAAAGCGGTTGATTCCAGTGCAAA
TGTGCAACCTGAGAGCGTGGAGACCATATGGAACCTTAGAGGGATCCTGAACACCTGCTGGCACCGTGTTCGCCTTCTGA
CAATACACAACCTTAGAAGCCTTTTGTGATGATCCTACACATACACCTAACTAGTATTATCTCTTTAAATTTACCGCTCT
ATGTTGCACTGTCGTTCCGCTTTCGGATCTGCATTGGAGAAAAAGAGTCAAGAGGGACCAATAATATAATGCTGGCTGAC
TTGCTTGGATGCTGGAATAAAATCCCGTGCCACCTTGTTATCCTATTCTTTTTGAGTAAGAAATATGTGTGTATGAAATA
ATGGGCACAGGCTAGATCAACCTCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8762.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis