Browse Element(s) Details


Os.6059.1.S1_at

Description gb:AK104881.1
DB_XREF= gi:32990090
TID=Os.6059.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6059 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for glutaminyl-tRNA synthetase, partial sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-044-H01, full insert sequence.
FL= gb:AK119165.1 gb:AK069541.1 gb:AK104881.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2571011/11Bifunctional aminoacyl-tRNA synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g25670OsAffx.31881.1.S1_at10/1112+14871873..14872340hypothetical protein
LOC_Os12g25680OsAffx.19826.1.S1_at10/1112+14880538..14882879Papain family cysteine protease containing protein
LOC_Os12g25680OsAffx.19826.2.S1_at1/1112+14880538..14882879Papain family cysteine protease containing protein
LOC_Os12g25690Os.10473.1.S1_at11/1112+14885249..14887809UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25690Os.20425.2.S1_x_at1/1112+14885249..14887809UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25700Os.20425.1.S1_at11/1112+14890511..14893712UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25700Os.20425.2.S1_x_at10/1112+14890511..14893712UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25700Os.20425.2.S1_at7/1112+14890511..14893712UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25700Os.10473.1.S1_at1/1112+14890511..14893712UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25710Os.6059.1.S1_at11/1112+14894490..14902028Bifunctional aminoacyl-tRNA synthetase, putative, expressed
LOC_Os12g25720Os.54701.1.S1_at10/1112+14909584..14913966expressed protein
LOC_Os12g25734NANA12+14920973..14924804retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25750OsAffx.7699.1.S1_at11/1112+14926760..14927694hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6059.1.S1_at--430--7771Chr12:14895694..14895718 (25 bp)
GGTGCAAAAGCTGATATTCCTACGG
LOC_Os12g25710
Os.6059.1.S1_at--876--51Chr12:14895679..14895703 (25 bp)
ATTCCTACGGCTGACTTGGTTGAGA
LOC_Os12g25710
Os.6059.1.S1_at--516--6351Chr12:14895592..14895616 (25 bp)
GATGCCTGCCTTAAGGTTGTTAACA
LOC_Os12g25710
Os.6059.1.S1_at--652--5611Chr12:14895538..14895562 (25 bp)
GACAAAAAATTGATCCTGGCTCCAT
LOC_Os12g25710
Os.6059.1.S1_at--636--7371Chr12:14894970..14894994 (25 bp)
GTGACCTGGGAGCTGCCAAGACATT
LOC_Os12g25710
Os.6059.1.S1_at--670--211Chr12:14894936..14894960 (25 bp)
ATTTGAACAGCCAGATCTCCCAGAA
LOC_Os12g25710
Os.6059.1.S1_at--172--8191Chr12:14894767..14894791 (25 bp)
GGAACCACATGCTTTGCTTCTGGAA
LOC_Os12g25710
Os.6059.1.S1_at--685--451Chr12:14894702..14894726 (25 bp)
ATCTGTAACGGATCTCGGTTGTGAT
LOC_Os12g25710
Os.6059.1.S1_at--254--8851Chr12:14894681..14894705 (25 bp)
TGATCATTCATTCCTGCTGGCGAAG
LOC_Os12g25710
Os.6059.1.S1_at--1143--5411Chr12:14894660..14894684 (25 bp)
GAAGCCGTTGATTCACCATAGACAT
LOC_Os12g25710
Os.6059.1.S1_at--968--3551Chr12:14894596..14894620 (25 bp)
CATCTATTTACCGTGCAGTTTTGCT
LOC_Os12g25710
Target Sequence 
GGTGCAAAAGCTGATATTCCTACGGCTGACTTGGTTGAGAAAGTTAATGGGTTACTTGATGAGGTTCAGAAAAACTTGTT
TGAGACGGCGAAACAAAAGAGAGATGCCTGCCTTAAGGTTGTTAACACCTGGGATGAATTCATAGTGGCTCTGAATGACA
AAAAATTGATCCTGGCTCCATGGTGTGATGAAGAGGAAGTTGAGAAGGATGTGAAGGCTCGGACAAAAGGTGACCTGGGA
GCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGGAACCACATGCTTTGCTTCTGGAAAGCCTGC
GAAGAAATGGTCATTCTGGGGCCGCAGCTATTGATCTGTAACGGATCTCGGTTGTGATCATTCATTCCTGCTGGCGAAGC
CGTTGATTCACCATAGACATGTATTGCAGTTTTCATACTAGCAAAGCATGATACACATACATCTATTTACCGTGCAGTTT
TGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6059.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis