Browse Element(s) Details


Os.54701.1.S1_at

Description gb:AK106497.1
DB_XREF= gi:32991706
TID=Os.54701.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54701 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-E04, full insert sequence.
FL= gb:AK106497.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2572010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g25690Os.10473.1.S1_at11/1112+14885249..14887809UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25690Os.20425.2.S1_x_at1/1112+14885249..14887809UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25700Os.20425.1.S1_at11/1112+14890511..14893712UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25700Os.20425.2.S1_x_at10/1112+14890511..14893712UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25700Os.20425.2.S1_at7/1112+14890511..14893712UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25700Os.10473.1.S1_at1/1112+14890511..14893712UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25710Os.6059.1.S1_at11/1112+14894490..14902028Bifunctional aminoacyl-tRNA synthetase, putative, expressed
LOC_Os12g25720Os.54701.1.S1_at10/1112+14909584..14913966expressed protein
LOC_Os12g25734NANA12+14920973..14924804retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25750OsAffx.7699.1.S1_at11/1112+14926760..14927694hypothetical protein
LOC_Os12g25760NANA12+14930534..14931309hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54701.1.S1_at--897--2291Chr12:14910059..14910083 (25 bp)
AAATGGTCTGTATTTCCATCTTGAT
LOC_Os12g25720
Os.54701.1.S1_at--935--4871Chr12:14909967..14909991 (25 bp)
GCTATTTATCTCGTTGCTTTTCTTA
LOC_Os12g25720
Os.54701.1.S1_at--1056--8771Chr12:14909942..14909966 (25 bp)
TGTTTAGCATGACTACATCTTTTCC
LOC_Os12g25720
Os.54701.1.S1_at--626--6471Chr12:14909868..14909892 (25 bp)
GATACATTTCTTTGACTTCATTGCC
LOC_Os12g25720
Os.54701.1.S1_at--932--6911Chr12:14909787..14909811 (25 bp)
GTATGATTGCCTTTCTTACATCTGT
LOC_Os12g25720
Os.54701.1.S1_at--961--2071Chr12:14909770..14909794 (25 bp)
ACATCTGTTTGGTGATTTGGACACT
LOC_Os12g25720
Os.54701.1.S1_at--339--10871Chr12:14909754..14909778 (25 bp)
TTGGACACTGGTTTGCATTTTTTGC
LOC_Os12g25720
Os.54701.1.S1_at--232--4951Chr12:14909740..14909764 (25 bp)
GCATTTTTTGCTGGGTATCCTTGTT
LOC_Os12g25720
Os.54701.1.S1_at--214--7851Chr12:14909727..14909751 (25 bp)
GGTATCCTTGTTGTAGACGTTGCTT
LOC_Os12g25720
Os.54701.1.S1_at--619--2511Chr12:14909678..14909702 (25 bp)
AACTAGGTAAATTTCTGGATGGCAA
LOC_Os12g25720
Os.54701.1.S1_at--952--8211NONE
TGGCAATATTACCTGTTACTTAACA
NONE
Target Sequence 
AAATGGTCTGTATTTCCATCTTGATCATATGATACCATTTGAATTTACTTTTATCTTCATGTTATTGTAACAATTTACAT
GACATTTACATAGCTATTTATCTCGTTGCTTTTCTTATGTTTAGCATGACTACATCTTTTCCTTTTTTTTCTAAGACTCA
GATTTATTGGTACTAGAAGCAAAGTACATGAGATACATTTCTTTGACTTCATTGCCATAATGTGTTTTTTGTTTTGCAAT
TGAGATGACTAAGATTATCACTATCATATTCAGTATGATTGCCTTTCTTACATCTGTTTGGTGATTTGGACACTGGTTTG
CATTTTTTGCTGGGTATCCTTGTTGTAGACGTTGCTTTAAAGTCAATGTAGTGTGTTAAAGAACTAGGTAAATTTCTGGA
TGGCAATATTACCTGTTACTTAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54701.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis