Browse Element(s) Details


OsAffx.6010.1.S1_at

Description tigr:9636.m03291
TID=OsAffx.6010.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3290011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32870Os.15306.1.S1_a_at11/118+20246981..20253219Betaine-aldehyde dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os08g32880NANA8+20256722..20259445NB-ARC domain containing protein
LOC_Os08g32890OsAffx.17304.1.S1_at11/118+20262645..20265662NB-ARC domain containing protein
LOC_Os08g32900OsAffx.6010.1.S1_at11/118+20267291..20267671hypothetical protein
LOC_Os08g32910Os.32314.2.S1_x_at11/118+20269184..20273131expressed protein
LOC_Os08g32910Os.32314.1.S1_at11/118+20269184..20273131expressed protein
LOC_Os08g32920Os.9608.1.S1_at11/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32920Os.9608.2.S1_x_at11/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32920Os.9608.3.S1_at9/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32920Os.9608.3.S1_x_at9/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32920Os.20425.2.S1_at1/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32930Os.33675.1.S1_at10/118+20290897..20294935expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6010.1.S1_at--588--7551Chr08:20267564..20267588 (25 bp)
GGGCCACGCGGCTACAGTAGACTCG
LOC_Os08g32900
OsAffx.6010.1.S1_at--553--3351Chr08:20267560..20267584 (25 bp)
CACGCGGCTACAGTAGACTCGGTGG
LOC_Os08g32900
OsAffx.6010.1.S1_at--1112--3951Chr08:20267532..20267556 (25 bp)
CGGATGTGGACTTGGCAGACTTGAA
LOC_Os08g32900
OsAffx.6010.1.S1_at--531--5671Chr08:20267524..20267548 (25 bp)
GACTTGGCAGACTTGAAGCCCTGGC
LOC_Os08g32900
OsAffx.6010.1.S1_at--142--1391Chr08:20267516..20267540 (25 bp)
AGACTTGAAGCCCTGGCCTGCAATC
LOC_Os08g32900
OsAffx.6010.1.S1_at--697--5411Chr08:20267510..20267534 (25 bp)
GAAGCCCTGGCCTGCAATCGTGTCG
LOC_Os08g32900
OsAffx.6010.1.S1_at--1148--5851Chr08:20267415..20267439 (25 bp)
GAGCCTCACCAGCATTCCCGTTGAT
LOC_Os08g32900
OsAffx.6010.1.S1_at--449--4351Chr08:20267407..20267431 (25 bp)
CCAGCATTCCCGTTGATGCCAAGAT
LOC_Os08g32900
OsAffx.6010.1.S1_at--465--591Chr08:20267392..20267416 (25 bp)
ATGCCAAGATTCATCGTCGCCTCCA
LOC_Os08g32900
OsAffx.6010.1.S1_at--485--3211Chr08:20267388..20267412 (25 bp)
CAAGATTCATCGTCGCCTCCATTGG
LOC_Os08g32900
OsAffx.6010.1.S1_at--1017--5831Chr08:20267339..20267363 (25 bp)
GACCTCGTCGCTGTTTGGAGCTCAC
LOC_Os08g32900
Target Sequence 
GGGCCACGCGGCTACAGTAGACTCGGTGGGCGCGGATGTGGACTTGGCAGACTTGAAGCCCTGGCCTGCAATCGTGTCGC
CTCCTTCCTCTCCCCGCGTGCTCACCAACATCCTCTTCGCCACCGTTGCTACTCCAGCCGCATCCGCCCGAGCCTCACCA
GCATTCCCGTTGATGCCAAGATTCATCGTCGCCTCCATTGGATTCGACGCCGTCACCTTGGGCCCGACCTCGTCGCTGTT
TGGAGCTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6010.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis