Browse Element(s) Details


OsAffx.17304.1.S1_at

Description tigr:9636.m03290
TID=OsAffx.17304.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3289011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32860NANA8+20239247..20239629hypothetical protein
LOC_Os08g32870Os.15306.1.S1_a_at11/118+20246981..20253219Betaine-aldehyde dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os08g32880NANA8+20256722..20259445NB-ARC domain containing protein
LOC_Os08g32890OsAffx.17304.1.S1_at11/118+20262645..20265662NB-ARC domain containing protein
LOC_Os08g32900OsAffx.6010.1.S1_at11/118+20267291..20267671hypothetical protein
LOC_Os08g32910Os.32314.2.S1_x_at11/118+20269184..20273131expressed protein
LOC_Os08g32910Os.32314.1.S1_at11/118+20269184..20273131expressed protein
LOC_Os08g32920Os.9608.1.S1_at11/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32920Os.9608.2.S1_x_at11/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32920Os.9608.3.S1_at9/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32920Os.9608.3.S1_x_at9/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32920Os.20425.2.S1_at1/118+20275377..20285822Dynamin-2B, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17304.1.S1_at--368--6191Chr08:20264660..20264684 (25 bp)
GAGGACTTTCTCAGTTGTAGTGGCA
LOC_Os08g32890
OsAffx.17304.1.S1_at--745--6231Chr08:20264766..20264790 (25 bp)
GATGGCTCTGATCTATGTGAGTCCA
LOC_Os08g32890
OsAffx.17304.1.S1_at--471--2231Chr08:20264857..20264881 (25 bp)
ACAATCTGTCAGTTGTGCCACCTCA
LOC_Os08g32890
OsAffx.17304.1.S1_at--602--4411Chr08:20264873..20264897 (25 bp)
GCCACCTCAGCTTCAGCGTTTATAT
LOC_Os08g32890
OsAffx.17304.1.S1_at--1078--4391Chr08:20264921..20264945 (25 bp)
GCCACAATGGTTTACATCTCTTCAC
LOC_Os08g32890
OsAffx.17304.1.S1_at--281--10531Chr08:20264941..20264965 (25 bp)
TTCACCGCCTTGTGAGATTACTCTT
LOC_Os08g32890
OsAffx.17304.1.S1_at--5--3111Chr08:20264997..20265021 (25 bp)
AATATACTTCAAAGCCTGCCACAAC
LOC_Os08g32890
OsAffx.17304.1.S1_at--1114--5911Chr08:20265027..20265051 (25 bp)
GAGCTTTCATTGATTCGTGCACTTA
LOC_Os08g32890
OsAffx.17304.1.S1_at--107--8111Chr08:20265104..20265128 (25 bp)
GGACCTGGATCAGCTTAATGGCTTA
LOC_Os08g32890
OsAffx.17304.1.S1_at--566--8951Chr08:20265568..20265592 (25 bp)
TGACTCCTGAGACTGTCGCGGAAAT
LOC_Os08g32890
OsAffx.17304.1.S1_at--30--1051Chr08:20265598..20265622 (25 bp)
AGGTGACTTTCTTAACTGGTTGCAA
LOC_Os08g32890
Target Sequence 
GAGGACTTTCTCAGTTGTAGTGGCAGATAAAGAAAGCAAGATAGTTAAGGAGCTTATCAATCTTAAAAAGTTGAGGAGAT
TGGGAGTTCTGAACCTGAGAAGAGAAGATGGCTCTGATCTATGTGAGTCCATTGCAAAAATGGACCAACTTTCCTCTATT
TCAATAACTGCAATGGATGATGAATACCTGGACATACACAATCTGTCAGTTGTGCCACCTCAGCTTCAGCGTTTATATTT
GCGAGGGCAGTTGCAGGTGGTGCCACAATGGTTTACATCTCTTCACCGCCTTGTGAGATTACTCTTAAGTGGATCAAGTT
TGAATGAGGACTCCATAAATATACTTCAAAGCCTGCCACAACTTGCTGAGCTTTCATTGATTCGTGCACTTAATGTGGAC
CGGATAGAGTGCCAGATTGGTGGGTTTAGAAATCTAAAGATTTTGGACCTGGATCAGCTTAATGGCTTAGTCAATGTAAC
ACTGCATGGATCAATGAGGTGGAGCCTGACTCCTGAGACTGTCGCGGAAATGTCCAAGGTGACTTTCTTAACTGGTTGCA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17304.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis