Browse Element(s) Details


Os.32314.1.S1_at

Description gb:AK105302.1
DB_XREF= gi:32990511
TID=Os.32314.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.32314 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0456B03.4 (P0456B03.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-A06, full insert sequence.
FL= gb:AK105302.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3291011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32870Os.15306.1.S1_a_at11/118+20246981..20253219Betaine-aldehyde dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os08g32880NANA8+20256722..20259445NB-ARC domain containing protein
LOC_Os08g32890OsAffx.17304.1.S1_at11/118+20262645..20265662NB-ARC domain containing protein
LOC_Os08g32900OsAffx.6010.1.S1_at11/118+20267291..20267671hypothetical protein
LOC_Os08g32910Os.32314.2.S1_x_at11/118+20269184..20273131expressed protein
LOC_Os08g32910Os.32314.1.S1_at11/118+20269184..20273131expressed protein
LOC_Os08g32920Os.9608.1.S1_at11/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32920Os.9608.2.S1_x_at11/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32920Os.9608.3.S1_at9/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32920Os.9608.3.S1_x_at9/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32920Os.20425.2.S1_at1/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32930Os.33675.1.S1_at10/118+20290897..20294935expressed protein
LOC_Os08g32940OsAffx.22010.1.S1_at11/118+20296618..20298195Glycosyl hydrolase family 9 protein
LOC_Os08g32940OsAffx.22010.1.S1_x_at11/118+20296618..20298195Glycosyl hydrolase family 9 protein
LOC_Os08g32940OsAffx.15414.1.S1_x_at3/118+20296618..20298195Glycosyl hydrolase family 9 protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32314.1.S1_at--603--3051Chr08:20272466..20272490 (25 bp)
AATCGATCCAGGTCACAGAATTCAC
LOC_Os08g32910
Os.32314.1.S1_at--539--3411Chr08:20272481..20272671 (25 bp)
CAGAATTCACGATTCGAGACGCGTA
LOC_Os08g32910
Os.32314.1.S1_at--1110--8911Chr08:20272872..20272896 (25 bp)
TGAGCTGACCACCAACATATGCCAG
LOC_Os08g32910
Os.32314.1.S1_at--773--2071Chr08:20272886..20272910 (25 bp)
ACATATGCCAGTTGTTCAGACTCTA
LOC_Os08g32910
Os.32314.1.S1_at--395--4411Chr08:20272892..20272916 (25 bp)
GCCAGTTGTTCAGACTCTAGAAGAT
LOC_Os08g32910
Os.32314.1.S1_at--894--331Chr08:20272919..20272943 (25 bp)
ATACAGATCGTGTTTCAGATGGAAT
LOC_Os08g32910
Os.32314.1.S1_at--800--831Chr08:20272937..20272961 (25 bp)
ATGGAATTGTTCTGATCGATCTAGC
LOC_Os08g32910
Os.32314.1.S1_at--888--6391Chr08:20272950..20272974 (25 bp)
GATCGATCTAGCTAGGCCGGAGTGT
LOC_Os08g32910
Os.32314.1.S1_at--929--4831Chr08:20272960..20272984 (25 bp)
GCTAGGCCGGAGTGTCCGTGTAAAT
LOC_Os08g32910
Os.32314.1.S1_at--60--351Chr08:20272983..20273007 (25 bp)
ATAAACCGATTTTTATCGTGCTCAG
LOC_Os08g32910
Os.32314.1.S1_at--81--10351Chr08:20272994..20273018 (25 bp)
TTTATCGTGCTCAGATGGTAGTGCT
LOC_Os08g32910
Target Sequence 
AATCGATCCAGGTCACAGAATTCACGATTCGAGACGCGTATATGCTCAAGATCTTCGAGGACAACCAGACGAGGCTGCCA
AGCTGGTGCAACAGCGGGGCGGACAGGCTCCCGTTCTGCCAGATCCTGGGCGAGTACAAGATGGAGCTGCCGGAGTACAA
CACGATCGAGCCGTACGCCAACATGAACGAGAACTGCCCCTCCTCGCCGCCCACCTACACCAGGCCGCTGGGATGCTAGC
TGAGCTGACCACCAACATATGCCAGTTGTTCAGACTCTAGAAGATATATACAGATCGTGTTTCAGATGGAATTGTTCTGA
TCGATCTAGCTAGGCCGGAGTGTCCGTGTAAATAAACCGATTTTTATCGTGCTCAGATGGTAGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32314.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis