Browse Element(s) Details


Os.5175.1.S1_at

Description gb:AK102187.1
DB_XREF= gi:32987396
TID=Os.5175.1
CNT=34
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.5175 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 30846 dynamin-like protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033086P03, full insert sequence.
FL= gb:AK058670.1 gb:AK102187.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1382011/11Dynamin-2A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13770OsAffx.24421.1.S1_at7/116+7634956..7636291transposon protein, putative, unclassified
LOC_Os06g13770OsAffx.17654.2.S1_at4/116+7634956..7636291transposon protein, putative, unclassified
LOC_Os06g13780OsAffx.27622.2.S1_at10/116+7641071..7643454expressed protein
LOC_Os06g13780OsAffx.27622.1.S1_x_at8/116+7641071..7643454expressed protein
LOC_Os06g13789NANA6+7644975..7645329NA
LOC_Os06g13800NANA6+7646853..7647415hypothetical protein
LOC_Os06g13810Os.10991.1.S1_at11/116+7647923..7653339Pyrophosphate-fructose 6-phosphate 1-phosphotransferase beta subunit, putative, expressed
LOC_Os06g13820Os.5175.1.S1_at11/116+7660736..7669035Dynamin-2A, putative, expressed
LOC_Os06g13830OsAffx.15414.1.S1_x_at11/116+7670279..7673548Glycosyl hydrolase family 9 protein, expressed
LOC_Os06g13830Os.48095.1.S1_s_at11/116+7670279..7673548Glycosyl hydrolase family 9 protein, expressed
LOC_Os06g13830OsAffx.15414.1.S1_s_at11/116+7670279..7673548Glycosyl hydrolase family 9 protein, expressed
LOC_Os06g13830OsAffx.22010.1.S1_x_at3/116+7670279..7673548Glycosyl hydrolase family 9 protein, expressed
LOC_Os06g13839NANA6+7692247..7692891RNA recognition motif family protein
LOC_Os06g13850Os.52969.1.S2_at11/116+7693325..7695943F-box domain containing protein, expressed
LOC_Os06g13850Os.52969.1.S1_at11/116+7693325..7695943F-box domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000911biological_processcytokinesis by cell plate formation
GO:0006896biological_processGolgi to vacuole transport
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009920biological_processcell plate formation (sensu Magnoliophyta)
GO:0010051biological_processvascular tissue pattern formation (sensu Tracheophyta)
GO:0010091biological_processtrichome branching (sensu Magnoliophyta)
GO:0016192biological_processvesicle-mediated transport
GO:0005794cellular_componentGolgi apparatus
GO:0005874cellular_componentmicrotubule
GO:0009504cellular_componentcell plate
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0003924molecular_functionGTPase activity
GO:0005515molecular_functionprotein binding
GO:0005525molecular_functionGTP binding
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.5175.1.S1_at--83--7931Chr06:7668460..7668484 (25 bp)
GGATTGGAGGTCTGCCTTCGATTCC
LOC_Os06g13820
Os.5175.1.S1_at--606--2571Chr06:7668491..7668515 (25 bp)
AACGGACCCAGCTCAGGCAGCGAAT
LOC_Os06g13820
Os.5175.1.S1_at--705--671Chr06:7668552..7668576 (25 bp)
ATGAAAACGGCGACGTGACCTCCGG
LOC_Os06g13820
Os.5175.1.S1_at--775--3351Chr06:7668621..7668645 (25 bp)
CACCTCCTAAATACTAATCACGCTG
LOC_Os06g13820
Os.5175.1.S1_at--297--10191Chr06:7668651..7668675 (25 bp)
TATATATCCATGAACGAGCGCCGTG
LOC_Os06g13820
Os.5175.1.S1_at--962--6271Chr06:7668675..7668699 (25 bp)
GATGTATTCTTGCTAGGCACCACGC
LOC_Os06g13820
Os.5175.1.S1_at--946--1711Chr06:7668693..7668717 (25 bp)
ACCACGCCCTGTTTCTGATTGATAT
LOC_Os06g13820
Os.5175.1.S1_at--555--3451Chr06:7668807..7668831 (25 bp)
CAGGGTACCCTGAGTTGTTTATAGA
LOC_Os06g13820
Os.5175.1.S1_at--699--7831Chr06:7668842..7668866 (25 bp)
GGTAATCCATCCATTATCTCTATTG
LOC_Os06g13820
Os.5175.1.S1_at--1038--451Chr06:7668857..7668881 (25 bp)
ATCTCTATTGTTTCGTCATCTTTTT
LOC_Os06g13820
Os.5175.1.S1_at--608--8111Chr06:7668929..7668953 (25 bp)
GGACGATCAGTCTAGCTTTGTACTA
LOC_Os06g13820
Target Sequence
GGATTGGAGGTCTGCCTTCGATTCCGCATCCAACGGACCCAGCTCAGGCAGCGAATNCAAGGTCAAGAAGCGCTGATGGA
CGCAGAGGGCGCTATGAAAACGGCGACGTGACCTCCGGTGCCAACTCCGGCAGCCGACGCACTCCAAACCGGTTACCTCC
AGCACCTCCTAAATACTAATCACGCTGATTAGTATATATCCATGAACGAGCGCCGTGATGTATTCTTGCTAGGCACCACG
CCCTGTTTCTGATTGATATTGGTGGCTGGGGTGAGCGGATTTGGGGGATTTGGACTATAGAGAGAGAAAGCGTCTTGTTA
GTGGAGAGATTGCATGAACAATTTGTAAGCAGGGTACCCTGAGTTGTTTATAGAAATATAAATAGGTAATCCATCCATTA
TCTCTATTGTTTCGTCATCTTTTTTTGACTCATTCATGTCTGATTAATCCCCCTGCTTATAGGATTTTGTGGGACGATCA
GTCTAGCTTTGTACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5175.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis