Browse Element(s) Details

OsAffx.27621.1.S1_s_at

Description

tigr:9634.m01370
TID=OsAffx.27621.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glycosyl transferase family 8, putative
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g13760	11/11	glycosyl transferase family 8 protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g13720	Os.54410.1.S1_at	11/11	6	+	7601365..7604690	Pyruvate dehydrogenase E1 component alpha subunit, mitochondrial precursor, putative, expressed
LOC_Os06g13730	Os.55225.1.S1_at	10/11	6	+	7606109..7606940	Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os06g13740	OsAffx.29742.5.S1_s_at	11/11	6	+	7615604..7618653	transposon protein, putative, unclassified
LOC_Os06g13740	OsAffx.29742.1.S1_x_at	11/11	6	+	7615604..7618653	transposon protein, putative, unclassified
LOC_Os06g13740	OsAffx.29742.2.S1_x_at	7/11	6	+	7615604..7618653	transposon protein, putative, unclassified
LOC_Os06g13740	OsAffx.29742.3.S1_x_at	6/11	6	+	7615604..7618653	transposon protein, putative, unclassified
LOC_Os06g13750	OsAffx.29675.3.S1_at	11/11	6	+	7618835..7622920	expressed protein
LOC_Os06g13750	OsAffx.29675.3.S1_x_at	11/11	6	+	7618835..7622920	expressed protein
LOC_Os06g13750	OsAffx.29675.2.S1_x_at	8/11	6	+	7618835..7622920	expressed protein
LOC_Os06g13750	OsAffx.29675.1.S1_x_at	6/11	6	+	7618835..7622920	expressed protein
LOC_Os06g13750	OsAffx.29675.4.S1_x_at	3/11	6	+	7618835..7622920	expressed protein
LOC_Os06g13760	OsAffx.27621.1.S1_s_at	11/11	6	+	7628758..7630268	glycosyl transferase family 8 protein, putative, expressed
LOC_Os06g13770	OsAffx.24421.1.S1_at	7/11	6	+	7634956..7636291	transposon protein, putative, unclassified
LOC_Os06g13770	OsAffx.17654.2.S1_at	4/11	6	+	7634956..7636291	transposon protein, putative, unclassified
LOC_Os06g13780	OsAffx.27622.2.S1_at	10/11	6	+	7641071..7643454	expressed protein
LOC_Os06g13780	OsAffx.27622.1.S1_x_at	8/11	6	+	7641071..7643454	expressed protein
LOC_Os06g13789	NA	NA	6	+	7644975..7645329	NA
LOC_Os06g13800	NA	NA	6	+	7646853..7647415	hypothetical protein
LOC_Os06g13810	Os.10991.1.S1_at	11/11	6	+	7647923..7653339	Pyrophosphate-fructose 6-phosphate 1-phosphotransferase beta subunit, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0016051	biological_process	carbohydrate biosynthesis
GO:0016757	molecular_function	transferase activity, transferring glycosyl groups
GO:0016758	molecular_function	transferase activity, transferring hexosyl groups

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27621.1.S1_s_at--1085--419	1	Chr06:7629850..7629874 (25 bp)	CCCGCATTGGTGTTCTCTTGGTAGA	LOC_Os06g13760
OsAffx.27621.1.S1_s_at--514--795	1	Chr06:7629881..7629905 (25 bp)	GGATCTCTAGCTGTAGTGCCATACT	LOC_Os06g13760
OsAffx.27621.1.S1_s_at--707--919	1	Chr06:7629897..7629921 (25 bp)	TGCCATACTGGGACACAATAATTCT	LOC_Os06g13760
OsAffx.27621.1.S1_s_at--240--1057	1	Chr06:7629918..7629942 (25 bp)	TTCTTTTGTTGGTTGCGCGGGTTCA	LOC_Os06g13760
OsAffx.27621.1.S1_s_at--202--915	1	Chr06:7629931..7629955 (25 bp)	TGCGCGGGTTCATGGCAATTGCAAT	LOC_Os06g13760
OsAffx.27621.1.S1_s_at--143--823	1	Chr06:7629944..7629968 (25 bp)	GGCAATTGCAATGGTGATCCTCCAT	LOC_Os06g13760
OsAffx.27621.1.S1_s_at--800--637	1	Chr06:7629959..7629983 (25 bp)	GATCCTCCATGGCATTGCATTGCAT	LOC_Os06g13760
OsAffx.27621.1.S1_s_at--132--475	2	Chr06:7629991..7630015 (25 bp)	GCTGTTGCCGCCGTGAGCTAAGCCA	LOC_Os06g13760
OsAffx.27621.1.S1_s_at--113--41	1	Chr06:7630106..7630130 (25 bp)	ATCTTGTTCTTTTCGGCGGAATTCA	LOC_Os06g13760
OsAffx.27621.1.S1_s_at--161--319	1	Chr06:7630186..7630210 (25 bp)	CAATTCGCTCGATTGGCGGTGTACA	LOC_Os06g13760
OsAffx.27621.1.S1_s_at--385--835	1	Chr06:7630200..7630224 (25 bp)	GGCGGTGTACAATTCTTTGGTAGGA	LOC_Os06g13760

Target Sequence

CCCGCATTGGTGTTCTCTTGGTAGAAATTGAGGATCTCTAGCTGTAGTGCCATACTGGGACACAATAATTCTTTTGTTGG
TTGCGCGGGTTCATGGCAATTGCAATGGTGATCCTCCATGGCATTGCATTGCATTGCTGCTGCTGTTGCCGCCGTGAGCT
AAGCCACCCCTCGCCATCGGCTGTACAGGGCGGTGAAGGGAGGCCGCGGCGATTGCCGCGCGAGGATGGGGGGAGAATGG
ATAGAGAGAAAAGATGATCTTGTTCTTTTCGGCGGAATTCAGATTGGTTATTTGGGGGGGATTTTGATTCTTTTGGGTGG
TGATTCTTGGGGTTCCCAATTCGCTCGATTGGCGGTGTACAATTCTTTGGTAGGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis