Browse Element(s) Details


OsAffx.29675.4.S1_x_at

Description tigr:9637.m00017
TID=OsAffx.29675.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0179011/11hypothetical protein
LOC_Os02g162206/11hypothetical protein
LOC_Os06g138906/11hypothetical protein
LOC_Os06g137503/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g01750Os.52238.1.S1_at6/119+521523..524616transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g01750OsAffx.23366.2.S1_s_at1/119+521523..524616transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g01760Os.46314.3.S1_at4/119+526739..530038transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g01760Os.53142.1.S1_at3/119+526739..530038transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g01770OsAffx.7362.1.S1_x_at1/119+533053..535355transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g01780OsAffx.29742.5.S1_s_at11/119+539088..541980transposon protein, putative, unclassified
LOC_Os09g01780OsAffx.29742.2.S1_x_at11/119+539088..541980transposon protein, putative, unclassified
LOC_Os09g01780OsAffx.29742.1.S1_x_at4/119+539088..541980transposon protein, putative, unclassified
LOC_Os09g01780OsAffx.29742.3.S1_x_at3/119+539088..541980transposon protein, putative, unclassified
LOC_Os09g01780OsAffx.29742.4.S1_x_at1/119+539088..541980transposon protein, putative, unclassified
LOC_Os09g01790OsAffx.29675.4.S1_x_at11/119+544109..546609hypothetical protein
LOC_Os09g01800Os.40855.2.S1_x_at5/119+551885..554493hypothetical protein
LOC_Os09g01800Os.40855.4.S1_x_at3/119+551885..554493hypothetical protein
LOC_Os09g01800Os.40855.4.S1_at1/119+551885..554493hypothetical protein
LOC_Os09g01800Os.40360.1.S1_x_at1/119+551885..554493hypothetical protein
LOC_Os09g01810NANA9+559258..562200retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g01820NANA9+562516..565952retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g01830Os.45977.1.S1_at5/119+568585..573343retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29675.4.S1_x_at--918--4572Chr06:7738315..7738335 (21 bp)
GCGCTGATGATGTTACTGGATGCAA
LOC_Os06g13890
OsAffx.29675.4.S1_x_at--325--2954Chr06:7738374..7738398 (25 bp)
AAGGCGCTGATGATGTTATTGGAAA
LOC_Os06g13890
OsAffx.29675.4.S1_x_at--150--5531Chr09:544486..544510 (25 bp)
GAAAAGCAAGCACCCAATGCTGCAG
LOC_Os09g01790
OsAffx.29675.4.S1_x_at--128--3031Chr09:544471..544495 (25 bp)
AATGCTGCAGCACAAAATGTTCCAG
LOC_Os09g01790
OsAffx.29675.4.S1_x_at--379--173Chr06:7738525..7738549 (25 bp)
ATATCCTTTCCTAACAACAACCATT
LOC_Os06g13890
OsAffx.29675.4.S1_x_at--948--3173Chr06:7738573..7738597 (25 bp)
CAATCTTGGTTTTGATAGCTCTCAG
LOC_Os06g13890
OsAffx.29675.4.S1_x_at--1047--6473Chr06:7738586..7738610 (25 bp)
GATAGCTCTCAGGAAGTTGTGCAAA
LOC_Os06g13890
OsAffx.29675.4.S1_x_at--792--1511Chr09:544211..544235 (25 bp)
AGCAGACGAGGCCATTGCCAGCAAA
LOC_Os09g01790
OsAffx.29675.4.S1_x_at--311--2274Chr06:7738747..7738771 (25 bp)
AAATCTGCCACAAAATCACCTGTCG
LOC_Os06g13890
OsAffx.29675.4.S1_x_at--400--3373Chr09:544173..544197 (25 bp)
CACCTGTCGCTGAAGTAATCTCCAA
LOC_Os09g01790
OsAffx.29675.4.S1_x_at--36--8191Chr09:544148..544172 (25 bp)
GGAACCTATTGCTGATGATTGTGAA
LOC_Os09g01790
Target Sequence 
GCGCTGATGATGTTACTGGATGCAATGGAGATGACACAAATGAAGGGATTGCCAGCGGAGGCAAAGGCGCTGATGATGTT
ATTGGAAAAGGGAAACAAGTAGATGAAGGGATTGGGTTTGGAGACAAGGACAAACATGAAGAAAAGCAAGCACCCAATGC
TGCAGCACAAAATGTTCCAGAATCAGAGAAGCAACCAGTGCAAAAGGCAGAAAAATATCCTTTCCTAACAACAACCATTG
ATTCACATGAAGTTCCAAACTTCAATCTTGGTTTTGATAGCTCTCAGGAAGTTGTGCAAACACCAAAGGGGCAAGAAGCA
ACAGGAACATCTCGAGGTAAAGAATTTCCTAGAATTATCACAAATGAGGACTATGGAAGTTTTACTACTGAAGACTATGA
AAAGGTTGGGAGAGAAGCAGACGAGGCCATTGCCAGCAAATCTGCCACAAAATCACCTGTCGCTGAAGTAATCTCCAAGG
AACCTATTGCTGATGATTGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29675.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis