Browse Element(s) Details

OsAffx.29742.1.S1_x_at

Description

tigr:9634.m01368
TID=OsAffx.29742.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=FAR1 family, putative
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g13740	11/11	transposon protein, putative, unclassified
LOC_Os02g16210	6/11	transposon protein, putative, unclassified
LOC_Os06g13900	6/11	transposon protein, putative, unclassified, expressed
LOC_Os09g01780	4/11	transposon protein, putative, unclassified

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g13680	Os.8239.1.S1_at	11/11	6	+	7590593..7592328	senescence-associated protein, putative, expressed
LOC_Os06g13690	Os.27160.1.A1_at	3/11	6	+	7594184..7594953	hypothetical protein
LOC_Os06g13690	Os.25513.1.S1_at	1/11	6	+	7594184..7594953	hypothetical protein
LOC_Os06g13700	OsAffx.31590.1.S1_at	9/11	6	+	7595394..7596215	hypothetical protein
LOC_Os06g13700	OsAffx.11302.2.S1_at	1/11	6	+	7595394..7596215	hypothetical protein
LOC_Os06g13710	OsAffx.28184.1.S1_x_at	11/11	6	+	7599957..7600523	glycosyltransferase, putative
LOC_Os06g13720	Os.54410.1.S1_at	11/11	6	+	7601365..7604690	Pyruvate dehydrogenase E1 component alpha subunit, mitochondrial precursor, putative, expressed
LOC_Os06g13730	Os.55225.1.S1_at	10/11	6	+	7606109..7606940	Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os06g13740	OsAffx.29742.5.S1_s_at	11/11	6	+	7615604..7618653	transposon protein, putative, unclassified
LOC_Os06g13740	OsAffx.29742.1.S1_x_at	11/11	6	+	7615604..7618653	transposon protein, putative, unclassified
LOC_Os06g13740	OsAffx.29742.2.S1_x_at	7/11	6	+	7615604..7618653	transposon protein, putative, unclassified
LOC_Os06g13740	OsAffx.29742.3.S1_x_at	6/11	6	+	7615604..7618653	transposon protein, putative, unclassified
LOC_Os06g13750	OsAffx.29675.3.S1_at	11/11	6	+	7618835..7622920	expressed protein
LOC_Os06g13750	OsAffx.29675.3.S1_x_at	11/11	6	+	7618835..7622920	expressed protein
LOC_Os06g13750	OsAffx.29675.2.S1_x_at	8/11	6	+	7618835..7622920	expressed protein
LOC_Os06g13750	OsAffx.29675.1.S1_x_at	6/11	6	+	7618835..7622920	expressed protein
LOC_Os06g13750	OsAffx.29675.4.S1_x_at	3/11	6	+	7618835..7622920	expressed protein
LOC_Os06g13760	OsAffx.27621.1.S1_s_at	11/11	6	+	7628758..7630268	glycosyl transferase family 8 protein, putative, expressed
LOC_Os06g13770	OsAffx.24421.1.S1_at	7/11	6	+	7634956..7636291	transposon protein, putative, unclassified
LOC_Os06g13770	OsAffx.17654.2.S1_at	4/11	6	+	7634956..7636291	transposon protein, putative, unclassified
LOC_Os06g13780	OsAffx.27622.2.S1_at	10/11	6	+	7641071..7643454	expressed protein
LOC_Os06g13780	OsAffx.27622.1.S1_x_at	8/11	6	+	7641071..7643454	expressed protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.29742.1.S1_x_at--490--623	3	Chr09:541449..541473 (25 bp)	GATGGCATTCTTTGCTGTCATGTTC	LOC_Os09g01780
OsAffx.29742.1.S1_x_at--874--631	2	Chr09:541632..541656 (25 bp)	GATGACATCTGATTTTGTGGGCCAA	LOC_Os09g01780
OsAffx.29742.1.S1_x_at--245--755	4	Chr09:541650..541674 (25 bp)	GGGCCAAGTGAGTGACATTCCAGAA	LOC_Os09g01780
OsAffx.29742.1.S1_x_at--859--1021	4	Chr09:541682..541706 (25 bp)	TATTGCCTAGATGGACGATGGTTAA	LOC_Os09g01780
OsAffx.29742.1.S1_x_at--221--167	3	Chr06:7618238..7618262 (25 bp)	AGCCTGAATTGCCTCCAGTTACAAG	LOC_Os06g13740
OsAffx.29742.1.S1_x_at--974--101	2	Chr06:7618309..7618333 (25 bp)	AGGTATACCAATCTGTGCACAAAAT	LOC_Os06g13740
OsAffx.29742.1.S1_x_at--653--555	3	Chr06:7618368..7618392 (25 bp)	GAAAGCCTACCGTATGGCTCTACAG	LOC_Os06g13740
OsAffx.29742.1.S1_x_at--435--167	2	Chr06:7618464..7618488 (25 bp)	AGCCCCAGCTGATCCTGCAAGAGGA	LOC_Os06g13740
OsAffx.29742.1.S1_x_at--619--93	1	Chr06:7618485..7618509 (25 bp)	AGGAATTTCAGATATCCCCTCGGCA	LOC_Os06g13740
OsAffx.29742.1.S1_x_at--386--971	1	Chr06:7618510..7618534 (25 bp)	TCAACTAACCCAACGCTACAGATAA	LOC_Os06g13740
OsAffx.29742.1.S1_x_at--549--121	3	Chr09:542032..542056 (25 bp)	AGTTTCAACAAGACGCAAGCCTGGG	NONE

Target Sequence

GATGGCATTCTTTGCTGTCATGTTCTGAAGGTGATGACATCTGATTTTGTGGGCCAAGTGAGTGACATTCCAGAACATTA
CATATTGCCTAGATGGACGATGGTTAAAGAGCCTGAATTGCCTCCAGTTACAAGCATTGGTGAACAAATGCAATTGCCCC
CTGAATCTCTAAAGCTAATCAGGTATACCAATCTGTGCACAAAATTTACACAGATTGCAAAAGATGCATCAAGCAACGAG
AAAGCCTACCGTATGGCTCTACAGCGTATGAGCTCAATGACTGATGACTTAGCAGCTATGAAGCAGAGTAGAAAGAAACA
GAAAAAAGCACAGCCAGCCCCAGCTGATCCTGCAAGAGGAATTTCAGATATCCCCTCGGCATCAACTAACCCAACGCTAC
AGATAAATGACCCCCCCATCATACAAAAGCAAGGGAGACCAGTTTCAACAAGACGCAAGCCTGGG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis