Browse Element(s) Details

Os.55225.1.S1_at

Description

gb:AK107692.1
DB_XREF= gi:32992901
TID=Os.55225.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55225 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-C01, full insert sequence.
FL= gb:AK107692.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g13730	10/11	Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os09g31160	5/11	Glutamate receptor 3.3 precursor, putative
LOC_Os11g32870	1/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g13670	Os.50197.1.S1_at	10/11	6	+	7583781..7589606	Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os06g13680	Os.8239.1.S1_at	11/11	6	+	7590593..7592328	senescence-associated protein, putative, expressed
LOC_Os06g13690	Os.27160.1.A1_at	3/11	6	+	7594184..7594953	hypothetical protein
LOC_Os06g13690	Os.25513.1.S1_at	1/11	6	+	7594184..7594953	hypothetical protein
LOC_Os06g13700	OsAffx.31590.1.S1_at	9/11	6	+	7595394..7596215	hypothetical protein
LOC_Os06g13700	OsAffx.11302.2.S1_at	1/11	6	+	7595394..7596215	hypothetical protein
LOC_Os06g13710	OsAffx.28184.1.S1_x_at	11/11	6	+	7599957..7600523	glycosyltransferase, putative
LOC_Os06g13720	Os.54410.1.S1_at	11/11	6	+	7601365..7604690	Pyruvate dehydrogenase E1 component alpha subunit, mitochondrial precursor, putative, expressed
LOC_Os06g13730	Os.55225.1.S1_at	10/11	6	+	7606109..7606940	Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os06g13740	OsAffx.29742.5.S1_s_at	11/11	6	+	7615604..7618653	transposon protein, putative, unclassified
LOC_Os06g13740	OsAffx.29742.1.S1_x_at	11/11	6	+	7615604..7618653	transposon protein, putative, unclassified
LOC_Os06g13740	OsAffx.29742.2.S1_x_at	7/11	6	+	7615604..7618653	transposon protein, putative, unclassified
LOC_Os06g13740	OsAffx.29742.3.S1_x_at	6/11	6	+	7615604..7618653	transposon protein, putative, unclassified
LOC_Os06g13750	OsAffx.29675.3.S1_at	11/11	6	+	7618835..7622920	expressed protein
LOC_Os06g13750	OsAffx.29675.3.S1_x_at	11/11	6	+	7618835..7622920	expressed protein
LOC_Os06g13750	OsAffx.29675.2.S1_x_at	8/11	6	+	7618835..7622920	expressed protein
LOC_Os06g13750	OsAffx.29675.1.S1_x_at	6/11	6	+	7618835..7622920	expressed protein
LOC_Os06g13750	OsAffx.29675.4.S1_x_at	3/11	6	+	7618835..7622920	expressed protein
LOC_Os06g13760	OsAffx.27621.1.S1_s_at	11/11	6	+	7628758..7630268	glycosyl transferase family 8 protein, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006874	biological_process	calcium ion homeostasis
GO:0006883	biological_process	sodium ion homeostasis
GO:0009416	biological_process	response to light stimulus
GO:0030007	biological_process	potassium ion homeostasis
GO:0005217	molecular_function	intracellular ligand-gated ion channel activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.55225.1.S1_at--130--443	1	Chr06:7606754..7606778 (25 bp)	GCCATGGTGACGAGCAGCGCCGGGA	LOC_Os06g13730
Os.55225.1.S1_at--1138--165	2	Chr09:18740340..18740364 (25 bp)	AGCGCCGGGATCTCCTCGTTCAGTG	LOC_Os09g31160
Os.55225.1.S1_at--464--675	2	Chr09:18740304..18740347 (25 bp)	GTTCAGTGAGGACCAACGGCCAGCC	LOC_Os09g31160
Os.55225.1.S1_at--238--871	2	Chr09:18740252..18740276 (25 bp)	TGTCCACGGACATCCAGGGTCTGGA	LOC_Os09g31160
Os.55225.1.S1_at--945--103	1	Chr06:7606219..7606243 (25 bp)	AGGTGCGGAGGCAATCCGATCTGAT	LOC_Os06g13730
Os.55225.1.S1_at--260--519	1	Chr06:7606209..7606233 (25 bp)	GCAATCCGATCTGATGAATTGGCGG	LOC_Os06g13730
Os.55225.1.S1_at--519--761	6	Chr11:18915456..18915479 (23 bp)	GGGCAATCTTGCCATTTGAAAAATA	LOC_Os11g32870
Os.55225.1.S1_at--878--311	2	Chr09:18739753..18739777 (25 bp)	AATATTATCACCTCTTTTGATCTGG	LOC_Os09g31160
Os.55225.1.S1_at--369--965	4	Chr11:1160906..1160926 (21 bp)	TCACCTCTTTTGATCTGGAAAATAT	NONE
Os.55225.1.S1_at--381--33	1	Chr06:7606114..7606138 (25 bp)	ATAAAATATTGTCTCTGGTGTTCTA	LOC_Os06g13730
Os.55225.1.S1_at--80--23	1	Chr06:7606109..7606133 (25 bp)	ATATTGTCTCTGGTGTTCTATAACC	NONE

Target Sequence

GCCATGGTGACGAGCAGCGCCGGGATCTCCTCGTTCAGTGAGGACCAACGGCCAGCCTCACCTCCATCCTCACGGTGCAG
CAGCTGTCCACGGACATCCAGGGTCTGGACGGCCTCATTGCCAGCTCCGACCCCATCGGCTTCCAGGTCGGCTCCTTCGC
CAAGAGCTACCTGATGCAGGAGCTGGGCGTGCCCGAGTCCCGCCTCTGGGAGCTCGCCATCACCGACTACTCCTCCACCC
TGCAGAGCGGCATCGTGGCGGCCATCGTCGACGAGCTGCCATACGTGGAGCTCTTCCTCTCCATCAACTGCCAGTTCAGG
ACAGTGGGGCAGGAGTTCACAAAGAGCGGATGGGGATTCGCTTTCCATCACGACTCCCCTCTGGCCGTGGACCTTTCGTC
GGCTGCCGAGGAGGAGGAGGGTGACGTGGCCGCCGAGGAGGAGGAGGCCGGAGAGCGAGGTAGGTGCGGAGGCAATCCGA
TCTGATGAATTGGCGGAGGCGGCGCTCCATGGCAGGGGCAATCTTGCCATTTGAAAAATATTATCACCTCTTTTGATCTG
GAAAATATAAAATATTGTCTCTGGTGTTCTATAACC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis