Browse Element(s) Details


Os.50197.1.S1_at

Description gb:AK120032.1
DB_XREF= gi:37989655
TID=Os.50197.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50197 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-186-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-186-D11, full insert sequence.
FL= gb:AK120032.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1367010/11Transcription factor E2F/dimerisation partner family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13650Os.27480.1.S1_at11/116+7562738..7570034Glycosyl hydrolases family 38 protein, expressed
LOC_Os06g13650OsAffx.27618.1.S1_at10/116+7562738..7570034Glycosyl hydrolases family 38 protein, expressed
LOC_Os06g13660Os.27835.1.S1_at11/116+7574001..7580552Alanyl-tRNA synthetase, putative, expressed
LOC_Os06g13670Os.50197.1.S1_at10/116+7583781..7589606Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os06g13680Os.8239.1.S1_at11/116+7590593..7592328senescence-associated protein, putative, expressed
LOC_Os06g13690Os.27160.1.A1_at3/116+7594184..7594953hypothetical protein
LOC_Os06g13690Os.25513.1.S1_at1/116+7594184..7594953hypothetical protein
LOC_Os06g13700OsAffx.31590.1.S1_at9/116+7595394..7596215hypothetical protein
LOC_Os06g13700OsAffx.11302.2.S1_at1/116+7595394..7596215hypothetical protein
LOC_Os06g13710OsAffx.28184.1.S1_x_at11/116+7599957..7600523glycosyltransferase, putative
LOC_Os06g13720Os.54410.1.S1_at11/116+7601365..7604690Pyruvate dehydrogenase E1 component alpha subunit, mitochondrial precursor, putative, expressed
LOC_Os06g13730Os.55225.1.S1_at10/116+7606109..7606940Glutamate receptor 3.3 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042023biological_processDNA endoreduplication
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50197.1.S1_at--719--4951Chr06:7585535..7585559 (25 bp)
GCATTTGGTACTGATCTGACTAACA
LOC_Os06g13670
Os.50197.1.S1_at--623--5491Chr06:7585597..7585621 (25 bp)
GAACAGAGGCAAGCCCACGCAGGAT
LOC_Os06g13670
Os.50197.1.S1_at--708--5011Chr06:7585615..7585639 (25 bp)
GCAGGATGGTGGCAACCTATTCAAT
LOC_Os06g13670
Os.50197.1.S1_at--608--971NONE
AGGAGCGATTTTGCTTATGGCCCCT
NONE
Os.50197.1.S1_at--1001--1391Chr06:7585768..7585792 (25 bp)
AGACTGGGAGAACCTTGCTTCTTCT
LOC_Os06g13670
Os.50197.1.S1_at--461--9571Chr06:7585787..7585811 (25 bp)
TCTTCTTTCCGTCCGCAATATCAAA
LOC_Os06g13670
Os.50197.1.S1_at--230--5731Chr06:7589319..7589343 (25 bp)
GACTGAACGATCTTTTTGGCCACTA
LOC_Os06g13670
Os.50197.1.S1_at--576--1031Chr06:7589357..7589381 (25 bp)
AGGTCATGGTACTCGGATCTCAGGC
LOC_Os06g13670
Os.50197.1.S1_at--1015--6551Chr06:7589404..7589428 (25 bp)
GATTCAGGCCGGTCCGTTGTAAACA
LOC_Os06g13670
Os.50197.1.S1_at--682--1131Chr06:7589513..7589537 (25 bp)
AGTGCTGGCCTTTGATTGATTGTAT
LOC_Os06g13670
Os.50197.1.S1_at--281--3711Chr06:7589580..7589604 (25 bp)
CTAGGATACCTGATTGTCGATTTGT
LOC_Os06g13670
Target Sequence 
GCATTTGGTACTGATCTGACTAACATTGACAATAAGAGGGGTAAGTTGGACTCCACAATGGAGAACAGAGGCAAGCCCAC
GCAGGATGGTGGCAACCTATTCAATAATTTGCAGAGGCAATTAGGGCAAGAGAACAGGAGCGATTTTGCTTATGGCCCCT
TCCACCCTGCTGTTGCAAGGAAACAAGAACATGGTAATCGCACAGTACAAGAGAAGGAGAGGAAGAGCATTCAAGACTGG
GAGAACCTTGCTTCTTCTTTCCGTCCGCAATATCAAAATCCAGGACTGAACGATCTTTTTGGCCACTACATGGAAGCAAG
GAGGTCATGGTACTCGGATCTCAGGCGAGACAGAGCATCATAAAACCAGATTCAGGCCGGTCCGTTGTAAACAAAATTCT
TGTAGGCAGATAAACTCATTTGTTGATGCATGGTTAGGGATTTTTGAGTTATACAAGATGTCACAAAAACAAAGGCTAGT
GCTGGCCTTTGATTGATTGTATTTACTCAGTGCAAGAAATTGGAAAGTCGTTTCGTCAATAATACTAGGATACCTGATTG
TCGATTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50197.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis