Browse Element(s) Details


Os.27835.1.S1_at

Description gb:AK066714.1
DB_XREF= gi:32976732
TID=Os.27835.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27835 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013088K03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088K03, full insert sequence.
FL= gb:AK066714.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1366011/11Alanyl-tRNA synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13640Os.27936.1.A1_at1/116+7554464..7557366expressed protein
LOC_Os06g13650Os.27480.1.S1_at11/116+7562738..7570034Glycosyl hydrolases family 38 protein, expressed
LOC_Os06g13650OsAffx.27618.1.S1_at10/116+7562738..7570034Glycosyl hydrolases family 38 protein, expressed
LOC_Os06g13660Os.27835.1.S1_at11/116+7574001..7580552Alanyl-tRNA synthetase, putative, expressed
LOC_Os06g13670Os.50197.1.S1_at10/116+7583781..7589606Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os06g13680Os.8239.1.S1_at11/116+7590593..7592328senescence-associated protein, putative, expressed
LOC_Os06g13690Os.27160.1.A1_at3/116+7594184..7594953hypothetical protein
LOC_Os06g13690Os.25513.1.S1_at1/116+7594184..7594953hypothetical protein
LOC_Os06g13700OsAffx.31590.1.S1_at9/116+7595394..7596215hypothetical protein
LOC_Os06g13700OsAffx.11302.2.S1_at1/116+7595394..7596215hypothetical protein
LOC_Os06g13710OsAffx.28184.1.S1_x_at11/116+7599957..7600523glycosyltransferase, putative
LOC_Os06g13720Os.54410.1.S1_at11/116+7601365..7604690Pyruvate dehydrogenase E1 component alpha subunit, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006419biological_processalanyl-tRNA aminoacylation
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27835.1.S1_at--1031--6071Chr06:7579955..7579979 (25 bp)
GAGTATCTCGTGGACACCCTTGAAG
LOC_Os06g13660
Os.27835.1.S1_at--17--4271Chr06:7580049..7580073 (25 bp)
CCGGCGTCGTCAAGATGGGTATCCA
LOC_Os06g13660
Os.27835.1.S1_at--1040--4951Chr06:7580094..7580118 (25 bp)
GCATAGCCAAACTCTGCGGCGGAGG
LOC_Os06g13660
Os.27835.1.S1_at--1148--2571Chr06:7580129..7580153 (25 bp)
AAGCCCAATTTTGCCCAAGCCGGTG
LOC_Os06g13660
Os.27835.1.S1_at--739--1431Chr06:7580166..7580190 (25 bp)
AGAACTTGCCGGGTGCGCTCGAGAA
LOC_Os06g13660
Os.27835.1.S1_at--631--51Chr06:7580204..7580228 (25 bp)
ATTGTTGCTGCTATATCGTCGAAGT
LOC_Os06g13660
Os.27835.1.S1_at--1045--7211Chr06:7580227..7580251 (25 bp)
GTCGAGCTGATTTTTGTACTGAACC
LOC_Os06g13660
Os.27835.1.S1_at--1132--1671Chr06:7580272..7580296 (25 bp)
AGCCTTACGGCTATATGGTTCACAG
LOC_Os06g13660
Os.27835.1.S1_at--256--8271Chr06:7580298..7580322 (25 bp)
GGCAGTAACATTTTTCGTCAACCAA
LOC_Os06g13660
Os.27835.1.S1_at--1143--4251Chr06:7580359..7580383 (25 bp)
CCGGTTGCGTACGTACTTTGCAGAA
LOC_Os06g13660
Os.27835.1.S1_at--302--4911Chr06:7580389..7580413 (25 bp)
GCTTGTACCATTTGTAACTACCCCG
LOC_Os06g13660
Target Sequence 
GAGTATCTCGTGGACACCCTTGAAGACCCTGCCGCGGTGATCTTAGGCTCAAGCCCGGGCGATGGCAAGGTCAGCTTGGT
TGCGGCCTTCAGCCCCGGCGTCGTCAAGATGGGTATCCAGGCAGGGAAGTTCGTCGGCGGCATAGCCAAACTCTGCGGCG
GAGGCGGCGGCGGCAAGCCCAATTTTGCCCAAGCCGGTGGACGGAAGCCGGAGAACTTGCCGGGTGCGCTCGAGAAGGCA
CGGGATGAAATTGTTGCTGCTATATCGTCGAAGTCGAGCTGATTTTTGTACTGAACCATGTACATAGGGAATAGAACAGC
CTTACGGCTATATGGTTCACAGTGGCAGTAACATTTTTCGTCAACCAAAAATAGGAAATTGTTGTTTTGGGATTTTTTTT
CTGCCCGGTTGCGTACGTACTTTGCAGAAAACCAGCTTGTACCATTTGTAACTACCCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27835.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis