Browse Element(s) Details


Os.8239.1.S1_at

Description gb:AF012897.1
DB_XREF= gi:2293567
TID=Os.8239.1
CNT=380
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.8239 (NCBI UniGene Cluster)
DEF=Oryza sativa HvB12D homolog mRNA, complete cds.
PROD=HvB12D homolog
FL= gb:AK121585.1 gb:AK099446.1 gb:AK119679.1 gb:AF012897.1 gb:AF466286.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1368011/11senescence-associated protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13650Os.27480.1.S1_at11/116+7562738..7570034Glycosyl hydrolases family 38 protein, expressed
LOC_Os06g13650OsAffx.27618.1.S1_at10/116+7562738..7570034Glycosyl hydrolases family 38 protein, expressed
LOC_Os06g13660Os.27835.1.S1_at11/116+7574001..7580552Alanyl-tRNA synthetase, putative, expressed
LOC_Os06g13670Os.50197.1.S1_at10/116+7583781..7589606Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os06g13680Os.8239.1.S1_at11/116+7590593..7592328senescence-associated protein, putative, expressed
LOC_Os06g13690Os.27160.1.A1_at3/116+7594184..7594953hypothetical protein
LOC_Os06g13690Os.25513.1.S1_at1/116+7594184..7594953hypothetical protein
LOC_Os06g13700OsAffx.31590.1.S1_at9/116+7595394..7596215hypothetical protein
LOC_Os06g13700OsAffx.11302.2.S1_at1/116+7595394..7596215hypothetical protein
LOC_Os06g13710OsAffx.28184.1.S1_x_at11/116+7599957..7600523glycosyltransferase, putative
LOC_Os06g13720Os.54410.1.S1_at11/116+7601365..7604690Pyruvate dehydrogenase E1 component alpha subunit, mitochondrial precursor, putative, expressed
LOC_Os06g13730Os.55225.1.S1_at10/116+7606109..7606940Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os06g13740OsAffx.29742.5.S1_s_at11/116+7615604..7618653transposon protein, putative, unclassified
LOC_Os06g13740OsAffx.29742.1.S1_x_at11/116+7615604..7618653transposon protein, putative, unclassified
LOC_Os06g13740OsAffx.29742.2.S1_x_at7/116+7615604..7618653transposon protein, putative, unclassified
LOC_Os06g13740OsAffx.29742.3.S1_x_at6/116+7615604..7618653transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0010150biological_processleaf senescence
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8239.1.S1_at--514--8251Chr06:7591021..7591045 (25 bp)
GGCAGCTGGAGTGCTCGAGAACCAT
LOC_Os06g13680
Os.8239.1.S1_at--382--2951Chr06:7590988..7591012 (25 bp)
AAGGCGCTACGCAGAGCATGGGCTA
LOC_Os06g13680
Os.8239.1.S1_at--1139--8631Chr06:7590970..7590994 (25 bp)
TGGGCTAAGAAACTATGTGCGCGAC
LOC_Os06g13680
Os.8239.1.S1_at--791--771Chr06:7590956..7590980 (25 bp)
ATGTGCGCGACAAGACCCCTGAGAT
LOC_Os06g13680
Os.8239.1.S1_at--988--2451Chr06:7590918..7590942 (25 bp)
AACAAGTTCTTCACTGAGCCAACAA
LOC_Os06g13680
Os.8239.1.S1_at--1006--171Chr06:7590881..7590905 (25 bp)
ATTTAGTTGGTTGTTGATTGCTCTG
LOC_Os06g13680
Os.8239.1.S1_at--527--6591Chr06:7590866..7590890 (25 bp)
GATTGCTCTGCTATTAGTTACTATT
LOC_Os06g13680
Os.8239.1.S1_at--81--731Chr06:7590799..7590823 (25 bp)
ATGTTGTCTCATCCATAAATCGGAG
LOC_Os06g13680
Os.8239.1.S1_at--173--3971Chr06:7590779..7590803 (25 bp)
CGGAGGACATCAAATGCCTCTTGTT
LOC_Os06g13680
Os.8239.1.S1_at--154--4331Chr06:7590746..7590770 (25 bp)
CCATATGTGTTTGTGGTCAATGACT
LOC_Os06g13680
Os.8239.1.S1_at--285--6731Chr06:7590713..7590737 (25 bp)
GTTCTAATACTATTTGTCTGATGAT
LOC_Os06g13680
Target Sequence 
GGCAGCTGGAGTGCTCGAGAACCATGAGGAGGGAAGGCGCTACGCAGAGCATGGGCTAAGAAACTATGTGCGCGACAAGA
CCCCTGAGATCATGCCAGCTATCAACAAGTTCTTCACTGAGCCAACAAAATGATGAAGGAATTTAGTTGGTTGTTGATTG
CTCTGCTATTAGTTACTATTGCGGATTGATTTAATGGATTTTACCCATTTCAAGCATTACATATGTTGTCTCATCCATAA
ATCGGAGGACATCAAATGCCTCTTGTTGGAAGTTACCATATGTGTTTGTGGTCAATGACTAGTCAAATGTTCTAATACTA
TTTGTCTGATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8239.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis