Browse Element(s) Details


OsAffx.27618.1.S1_at

Description tigr:9634.m01358
TID=OsAffx.27618.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=alpha-mannosidase-like protein - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1365010/11Glycosyl hydrolases family 38 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13610OsAffx.30187.1.S1_at11/116+7539775..7540865hypothetical protein
LOC_Os06g13620OsAffx.15410.1.S1_at11/116+7543707..7544168hypothetical protein
LOC_Os06g13630OsAffx.16522.1.S1_at1/116+7544994..7548258transposon protein, putative, Mutator sub-class
LOC_Os06g13640Os.27936.1.A1_at1/116+7554464..7557366expressed protein
LOC_Os06g13650Os.27480.1.S1_at11/116+7562738..7570034Glycosyl hydrolases family 38 protein, expressed
LOC_Os06g13650OsAffx.27618.1.S1_at10/116+7562738..7570034Glycosyl hydrolases family 38 protein, expressed
LOC_Os06g13660Os.27835.1.S1_at11/116+7574001..7580552Alanyl-tRNA synthetase, putative, expressed
LOC_Os06g13670Os.50197.1.S1_at10/116+7583781..7589606Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os06g13680Os.8239.1.S1_at11/116+7590593..7592328senescence-associated protein, putative, expressed
LOC_Os06g13690Os.27160.1.A1_at3/116+7594184..7594953hypothetical protein
LOC_Os06g13690Os.25513.1.S1_at1/116+7594184..7594953hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004559molecular_functionalpha-mannosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27618.1.S1_at--598--1031Chr06:7564302..7564326 (25 bp)
AGGTGTTGGGTGACCTTTGAAGTCT
LOC_Os06g13650
OsAffx.27618.1.S1_at--258--9471NONE
TCTGATATACGCAGAGCTTGCTGGC
NONE
OsAffx.27618.1.S1_at--1027--1251Chr06:7562991..7563015 (25 bp)
AGATTATCTTTGGTGCACTTTGAAC
LOC_Os06g13650
OsAffx.27618.1.S1_at--437--5431Chr06:7562970..7562994 (25 bp)
GAACCACCCCAAGTCATTTTATGTA
LOC_Os06g13650
OsAffx.27618.1.S1_at--319--2852Chr07:28826079..28826103 (25 bp)
AAGTCATTTTATGTAGCTGCATCTA
NONE
OsAffx.27618.1.S1_at--1030--8753Chr08:22511808..22511832 (25 bp)
TGTAGCTGCATCTACTCTATAATGT
NONE
OsAffx.27618.1.S1_at--365--731Chr06:7562928..7562952 (25 bp)
ATGTTGTAAAGAATTGCCCGTGTAA
LOC_Os06g13650
OsAffx.27618.1.S1_at--274--5211Chr06:7562918..7562942 (25 bp)
GAATTGCCCGTGTAAGTTGGAAAAG
LOC_Os06g13650
OsAffx.27618.1.S1_at--650--2812Chr07:28826143..28826167 (25 bp)
AAGATTACCGGTTTACAGGTTGCTG
NONE
OsAffx.27618.1.S1_at--781--3473Chr07:28826158..28826182 (25 bp)
CAGGTTGCTGATGTGTTTAAAGTTG
NONE
OsAffx.27618.1.S1_at--60--5533Chr10:849165..849189 (25 bp)
GAAAAGTCATTTATGTATTCCTAAA
NONE
Target Sequence 
AGGTGTTGGGTGACCTTTGAAGTCTGGATGTTACCCTCTGAATTCAGCCCGGCTGTTTCCTGGCAACCTTCTGATATACG
CAGAGCTTGCTGGCCAAGACCTGAAATAGTCTAGACAGTTGATTCTTGCTTTGAGAGTTTTCACATGTACAAATTATGAC
TGTAAACATTTTCTGAAGATCTCTCGAAGGCAGGCCTTGGTTATTTCTGGGGCTTATGTATCCTCGTTGCTACAAACCTC
ATAAGTGTTTTGCAGGCACTGGAACACGGTGTTAAATATATTAAGGTAAGATTATCTTTGGTGCACTTTGAACCACCCCA
AGTCATTTTATGTAGCTGCATCTACTCTATAATGTTGTAAAGAATTGCCCGTGTAAGTTGGAAAAGATTACCGGTTTACA
GGTTGCTGATGTGTTTAAAGTTGGAAAAGTCATTTATGTATTCCTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27618.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis