Browse Element(s) Details


Os.27936.1.A1_at

Description gb:AK100982.1
DB_XREF= gi:32986191
TID=Os.27936.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27936 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023144O06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023144O06, full insert sequence.
FL= gb:AK100982.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0460010/11expressed protein
LOC_Os06g136401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04560OsAffx.10906.2.A1_at11/111+2038102..2039572expressed protein
LOC_Os01g04570Os.26983.1.S1_s_at11/111+2045519..2049320Protein kinase domain containing protein, expressed
LOC_Os01g04580Os.6149.1.S1_at11/111+2050385..2054438Protein kinase domain containing protein, expressed
LOC_Os01g04590Os.33939.1.A1_at9/111+2056111..2059077expressed protein
LOC_Os01g04600Os.27936.1.A1_at10/111+2060417..2062797expressed protein
LOC_Os01g04610OsAffx.1931.1.S1_at11/111+2065390..2066065hypothetical protein
LOC_Os01g04610OsAffx.8723.1.S1_at2/111+2065390..2066065hypothetical protein
LOC_Os01g04610Os.54405.1.S1_at1/111+2065390..2066065hypothetical protein
LOC_Os01g04620Os.21801.1.S1_at11/111+2068645..2070405expressed protein
LOC_Os01g04630Os.8796.1.S2_s_at11/111+2071567..2074705muconate cycloisomerase, putative, expressed
LOC_Os01g04640OsAffx.1932.1.S1_at11/111+2076907..2078342Reticulon family protein, expressed
LOC_Os01g04640Os.21448.1.S1_s_at11/111+2076907..2078342Reticulon family protein, expressed
LOC_Os01g04650Os.4763.1.S1_at11/111+2080483..2084005PB1 domain containing protein, expressed
LOC_Os01g04650Os.4763.1.S2_at11/111+2080483..2084005PB1 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009960biological_processendosperm development
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27936.1.A1_at--1046--5431Chr01:2060933..2060957 (25 bp)
GAACCTGAGGATCATGTCACCAATG
LOC_Os01g04600
Os.27936.1.A1_at--508--6631Chr01:2060833..2060857 (25 bp)
GTTGTAGGCTACAGTTTCACCCTGA
LOC_Os01g04600
Os.27936.1.A1_at--802--7131Chr01:2060777..2060801 (25 bp)
GTCATATCAGTACTCGTCGTTGGGC
LOC_Os01g04600
Os.27936.1.A1_at--9--10852Chr06:7554558..7554577 (20 bp)
TTGGGCACCCTGGACAGGATTGCTA
LOC_Os06g13640
Os.27936.1.A1_at--1038--7552Chr01:2060700..2060724 (25 bp)
GGGCCATGTGTCCTGTATTCTTTCA
LOC_Os01g04600
Os.27936.1.A1_at--1104--1251Chr01:2060673..2060697 (25 bp)
AGATATCGCGCATCCTCAGACAAGG
LOC_Os01g04600
Os.27936.1.A1_at--33--10431Chr01:2060551..2060575 (25 bp)
TTATGTATCCTTTCGTTTGGCCTTT
LOC_Os01g04600
Os.27936.1.A1_at--363--8831Chr01:2060493..2060517 (25 bp)
TGATTCGAGATGTTGGTCGCCTGGT
LOC_Os01g04600
Os.27936.1.A1_at--26--6932Chr06:7554253..7554277 (25 bp)
GTATGTCTTTATGTATAGCCCCTGA
NONE
Os.27936.1.A1_at--310--312Chr06:7554239..7554263 (25 bp)
ATAGCCCCTGATTTGAACTCTGATG
NONE
Os.27936.1.A1_at--7--3091Chr01:2060417..2060441 (25 bp)
AATAAGAGCTTCGACATTGCTGTCC
NONE
Target Sequence 
GAACCTGAGGATCATGTCACCAATGTTAGAACATTTGATTTGTAAAGATCATAATCAAGTGTAAGGAACGAATTACATTT
CTAACTGAATTTTTTAAACTGTTGTAGGCTACAGTTTCACCCTGACATGGGTAGACCAACCTGGTGGCGGTGAATGGTCA
TATCAGTACTCGTCGTTGGGCACCCTGGACAGGATTGCTATGGGCTGGATGAAGGAGGACATAAAATTCAGCAGGGCCAT
GTGTCCTGTATTCTTTCAGCAGATATCGCGCATCCTCAGACAAGGCTAAGCTCAACTGGGAAGCTTAGTTTGGATTTNNG
NNGNCNNGNNNNNTNCNNGANAGTGGACTGAAACTGACTTGTTTTNAGGAGTGACACGAGGCTTTATGTATCCTTTCGTT
TGGCCTTTGTTGTTCCTGTTGTGAACATAACAATTAGCAAGTGATTCGAGATGTTGGTCGCCTGGTTGCCGTATGTCTTT
ATGTATAGCCCCTGATTTGAACTCTGATGGTTCTGAAAATAAGAGCTTCGACATTGCTGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27936.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis