Browse Element(s) Details


Os.26983.1.S1_s_at

Description gb:AK070932.1
DB_XREF= gi:32980955
TID=Os.26983.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.26983 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013116E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023065D19, full insert sequence.
FL= gb:AK099912.1 gb:AK070932.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0457011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04540NANA1+2020681..2022979protein kinase family protein, putative, expressed
LOC_Os01g04550Os.27011.1.A1_s_at11/111+2032920..2034972serine/threonine protein kinase, putative, expressed
LOC_Os01g04560OsAffx.10906.2.A1_at11/111+2038102..2039572expressed protein
LOC_Os01g04570Os.26983.1.S1_s_at11/111+2045519..2049320Protein kinase domain containing protein, expressed
LOC_Os01g04580Os.6149.1.S1_at11/111+2050385..2054438Protein kinase domain containing protein, expressed
LOC_Os01g04590Os.33939.1.A1_at9/111+2056111..2059077expressed protein
LOC_Os01g04600Os.27936.1.A1_at10/111+2060417..2062797expressed protein
LOC_Os01g04610OsAffx.1931.1.S1_at11/111+2065390..2066065hypothetical protein
LOC_Os01g04610OsAffx.8723.1.S1_at2/111+2065390..2066065hypothetical protein
LOC_Os01g04610Os.54405.1.S1_at1/111+2065390..2066065hypothetical protein
LOC_Os01g04620Os.21801.1.S1_at11/111+2068645..2070405expressed protein
LOC_Os01g04630Os.8796.1.S2_s_at11/111+2071567..2074705muconate cycloisomerase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26983.1.S1_s_at--984--5211Chr01:2048928..2049033 (25 bp)
GAATTACTAGAACATCCAGCTCAGG
LOC_Os01g04570
Os.26983.1.S1_s_at--190--2031Chr01:2049017..2049038 (22 bp)
ACTAGAACATCCAGCTCAGGAGATT
LOC_Os01g04570
Os.26983.1.S1_s_at--1090--4331Chr01:2049024..2049048 (25 bp)
CCAGCTCAGGAGATTAACACAGAAA
LOC_Os01g04570
Os.26983.1.S1_s_at--463--2471Chr01:2049039..2049063 (25 bp)
AACACAGAAAGTACGAGTTCTACTA
LOC_Os01g04570
Os.26983.1.S1_s_at--154--1871Chr01:2049051..2049075 (25 bp)
ACGAGTTCTACTATAAATACCAAAG
LOC_Os01g04570
Os.26983.1.S1_s_at--816--4811Chr01:2049084..2049108 (25 bp)
GCTCTAAGTGAAGTGCTAAGGGTTG
LOC_Os01g04570
Os.26983.1.S1_s_at--760--6291Chr01:2049166..2049190 (25 bp)
GATGATCTGCAGTCAAATTTTGGCA
LOC_Os01g04570
Os.26983.1.S1_s_at--1071--371Chr01:2049198..2049222 (25 bp)
ATCACACATTCATGGGTCATGGCAT
LOC_Os01g04570
Os.26983.1.S1_s_at--741--3591Chr01:2049204..2049228 (25 bp)
CATTCATGGGTCATGGCATTGACTA
LOC_Os01g04570
Os.26983.1.S1_s_at--648--9631Chr01:2049214..2049238 (25 bp)
TCATGGCATTGACTAGTGTGTTTAA
LOC_Os01g04570
Os.26983.1.S1_s_at--444--3711Chr01:2049226..2049250 (25 bp)
CTAGTGTGTTTAAGGTAGCTGAATC
LOC_Os01g04570
Target Sequence 
GAATTACTAGAACATCCAGCTCAGGAGATTAACACAGAAAGTACGAGTTCTACTATAAATACCAAAGCTGCACAAGCTCT
AAGTGAAGTGCTAAGGGTTGAGGAGACAAGCCTCGTTAATTCAAANGATCCTACAGTGACTACCAACTATGCAAAAAGAT
GATCTGCAGTCAAATTTTGGCATAGTATCATCACACATTCATGGGTCATGGCATTGACTAGTGTGTTTAAGGTAGCTGAA
TC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26983.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis