Browse Element(s) Details


Os.8796.1.S2_s_at

Description gb:AK072417.1
DB_XREF= gi:32982440
TID=Os.8796.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8796 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative zinc finger protein (P0039A07.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023085P15, full insert sequence.
FL= gb:AK072417.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0463011/11muconate cycloisomerase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04570Os.26983.1.S1_s_at11/111+2045519..2049320Protein kinase domain containing protein, expressed
LOC_Os01g04580Os.6149.1.S1_at11/111+2050385..2054438Protein kinase domain containing protein, expressed
LOC_Os01g04590Os.33939.1.A1_at9/111+2056111..2059077expressed protein
LOC_Os01g04600Os.27936.1.A1_at10/111+2060417..2062797expressed protein
LOC_Os01g04610OsAffx.1931.1.S1_at11/111+2065390..2066065hypothetical protein
LOC_Os01g04610OsAffx.8723.1.S1_at2/111+2065390..2066065hypothetical protein
LOC_Os01g04610Os.54405.1.S1_at1/111+2065390..2066065hypothetical protein
LOC_Os01g04620Os.21801.1.S1_at11/111+2068645..2070405expressed protein
LOC_Os01g04630Os.8796.1.S2_s_at11/111+2071567..2074705muconate cycloisomerase, putative, expressed
LOC_Os01g04640OsAffx.1932.1.S1_at11/111+2076907..2078342Reticulon family protein, expressed
LOC_Os01g04640Os.21448.1.S1_s_at11/111+2076907..2078342Reticulon family protein, expressed
LOC_Os01g04650Os.4763.1.S1_at11/111+2080483..2084005PB1 domain containing protein, expressed
LOC_Os01g04650Os.4763.1.S2_at11/111+2080483..2084005PB1 domain containing protein, expressed
LOC_Os01g04660Os.16097.1.S1_a_at11/111+2093994..2097496Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g04670OsAffx.10908.1.S1_at11/111+2099100..2099402hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8796.1.S2_s_at--950--5511Chr01:2072664..2072688 (25 bp)
GAAAAGCCCGCATTGCGCTGATGAT
LOC_Os01g04630
Os.8796.1.S2_s_at--49--5711Chr01:2072624..2072648 (25 bp)
GACTAGGATCGCTATGGGCTTTGCT
LOC_Os01g04630
Os.8796.1.S2_s_at--142--8311Chr01:2072608..2072632 (25 bp)
GGCTTTGCTGGTCATCTTGCAGCTG
LOC_Os01g04630
Os.8796.1.S2_s_at--252--5631Chr01:2072398..2072422 (25 bp)
GACACACCTCTTTTACTGTCTGAAG
LOC_Os01g04630
Os.8796.1.S2_s_at--816--2511Chr01:2071751..2071775 (25 bp)
AACTTGTAATCCTATATGACCTTGA
LOC_Os01g04630
Os.8796.1.S2_s_at--1063--4831Chr01:2071722..2071746 (25 bp)
GCTAATTATTGTTGCCAGTCCAGTT
LOC_Os01g04630
Os.8796.1.S2_s_at--307--6691Chr01:2071712..2071736 (25 bp)
GTTGCCAGTCCAGTTAGGCCTGAAA
LOC_Os01g04630
Os.8796.1.S2_s_at--1111--9751Chr01:2071659..2071683 (25 bp)
TAATGAGGCATTTTCAGCTGGCCTT
LOC_Os01g04630
Os.8796.1.S2_s_at--1122--4431Chr01:2071639..2071663 (25 bp)
GCCTTGTTGTTCTGTTCGATAAATA
LOC_Os01g04630
Os.8796.1.S2_s_at--657--2431Chr01:2071596..2071620 (25 bp)
AAAAGACCTTATGTATGCAGCCTCA
LOC_Os01g04630
Os.8796.1.S2_s_at--916--6911Chr01:2071584..2071608 (25 bp)
GTATGCAGCCTCAAATATGCTCAAG
LOC_Os01g04630
Target Sequence 
GAAAAGCCCGCATTGCGCTGATGATAGGCGGTATGGTTGAGACTAGGATCGCTATGGGCTTTGCTGGTCATCTTGCAGCT
GGTCTTGGTTGTTTCAGTTTTGTTGACCTGGACACACCTCTTTTACTGTCTGAAGATCCAGTGTTCGGTGGCTATGAAGT
TTCTGGACCTGTATACAAGTTTACAAATGCTCGAGGCCATGGTGGTTTCNTTCACTTAGACAACAACGGCTTGAAATAAG
GAATGCCCTAGCCCTTTGGGAGCTTCACAGACAACGGTGACACGTTCAATGAACAATTAATTGTTCATTATTTACCTTCA
ACAATAATCAATTGGAGTTGAAACCAAAGGAGCAGTTGTAAACTTGTAATCCTATATGACCTTGAAGAGGCTAATTATTG
TTGCCAGTCCAGTTAGGCCTGAAATATTTGATCNGNCTGTAGATGGATAAAATAATGAGGCATTTTCAGCTGGCCTTGTT
GTTCTGTTCGATAAATAAATTACTAAATATGGTATAAAAGACCTTATGTATGCAGCCTCAAATATGCTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8796.1.S2_s_at     

Putative homologies in rice

Putative homologies in arabidopsis