Browse Element(s) Details


Os.33939.1.A1_at

Description gb:AK073435.1
DB_XREF= gi:32983458
TID=Os.33939.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.33939 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033039C22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033039C22, full insert sequence.
FL= gb:AK073435.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g045909/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04550Os.27011.1.A1_s_at11/111+2032920..2034972serine/threonine protein kinase, putative, expressed
LOC_Os01g04560OsAffx.10906.2.A1_at11/111+2038102..2039572expressed protein
LOC_Os01g04570Os.26983.1.S1_s_at11/111+2045519..2049320Protein kinase domain containing protein, expressed
LOC_Os01g04580Os.6149.1.S1_at11/111+2050385..2054438Protein kinase domain containing protein, expressed
LOC_Os01g04590Os.33939.1.A1_at9/111+2056111..2059077expressed protein
LOC_Os01g04600Os.27936.1.A1_at10/111+2060417..2062797expressed protein
LOC_Os01g04610OsAffx.1931.1.S1_at11/111+2065390..2066065hypothetical protein
LOC_Os01g04610OsAffx.8723.1.S1_at2/111+2065390..2066065hypothetical protein
LOC_Os01g04610Os.54405.1.S1_at1/111+2065390..2066065hypothetical protein
LOC_Os01g04620Os.21801.1.S1_at11/111+2068645..2070405expressed protein
LOC_Os01g04630Os.8796.1.S2_s_at11/111+2071567..2074705muconate cycloisomerase, putative, expressed
LOC_Os01g04640OsAffx.1932.1.S1_at11/111+2076907..2078342Reticulon family protein, expressed
LOC_Os01g04640Os.21448.1.S1_s_at11/111+2076907..2078342Reticulon family protein, expressed
LOC_Os01g04650Os.4763.1.S1_at11/111+2080483..2084005PB1 domain containing protein, expressed
LOC_Os01g04650Os.4763.1.S2_at11/111+2080483..2084005PB1 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33939.1.A1_at--732--4951Chr01:2058502..2058526 (25 bp)
GCATCTGCCCGGAGCCAAAAGGCAA
LOC_Os01g04590
Os.33939.1.A1_at--913--9391Chr01:2058582..2058606 (25 bp)
TCGTACAGACTCAAGGTCGCGGCGT
LOC_Os01g04590
Os.33939.1.A1_at--1143--4211Chr01:2058719..2058743 (25 bp)
CCGCGTCGTGTCCAGAAGATGATGA
LOC_Os01g04590
Os.33939.1.A1_at--813--6031Chr01:2058751..2058775 (25 bp)
GAGATCGCCTGCCAACCTGAGAGTG
LOC_Os01g04590
Os.33939.1.A1_at--932--7471Chr01:2058811..2058835 (25 bp)
GTGTGTCTCATTCAGTTCGTATATT
LOC_Os01g04590
Os.33939.1.A1_at--923--7111Chr01:2058836..2058860 (25 bp)
GTCAGGGTTCAGACTGTACTCGGAT
LOC_Os01g04590
Os.33939.1.A1_at--1077--2351Chr01:2058872..2058896 (25 bp)
AAAGCGTGCATCCTGTTTTTGTTTT
LOC_Os01g04590
Os.33939.1.A1_at--328--791Chr01:2058959..2058983 (25 bp)
ATGTGTTTTCTTTTATGCCAGCTGG
LOC_Os01g04590
Os.33939.1.A1_at--103--9211Chr01:2058974..2058998 (25 bp)
TGCCAGCTGGTCTAGTGTTTATGTT
LOC_Os01g04590
Os.33939.1.A1_at--700--3291NONE
CACTCAAGCAGCTGGTGTACTTCTG
NONE
Os.33939.1.A1_at--191--7451Chr01:2059054..2059078 (25 bp)
GTGTACTTCTGTTGTACTGCTTCTA
NONE
Target Sequence 
GCATCTGCCCGGAGCCAAAAGGCAACAACAGCGGCGTCCCCGTGACGACGGCGATGTGCCTCCCGACGTTCGCCATGGCG
TCGTACAGACTCAAGGTCGCGGCGTGGGCACCGGGCGGGCGAGACAGGCAGNTGGTCGCCTCCCTNTCGCACGCCGCCGN
ACGCCTGGCTCGGCCTCCTCGGAGTTCACCACCCGGATCACCGCTTNTTCGCCGCTCGCCGCGTCGTGTCCAGAAGATGA
TGAGTCGATGGAGATCGCCTGCCAACCTGAGAGTGCAGAGAAGTTCTCTGTGTTCTTTTTTTTTTTTTTTTGTGTGTCTC
ATTCAGTTCGTATATTGTCAGGGTTCAGACTGTACTCGGATAGTTGGATCACAAAGCGTGCATCCTGTTTTTGTTTTCCA
GTAATGGTTTCAGAGAAAGATTAACCAAGAATGTATATAGAATTAGAAGACAATTAAAAATGTGTTTTCTTTTATGCCAG
CTGGTCTAGTGTTTATGTTTAAACGTGATATTTTGTTGTACCAAAACTCAGATACGAGTAACACTCAAGCAGCTGGTGTA
CTTCTGTTGTACTGCTTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33939.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis