Browse Element(s) Details


OsAffx.10906.2.A1_at

Description tigr:9629.m00374
TID=OsAffx.10906.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0456011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04520Os.53382.1.S1_at6/111+2011623..2014859Protein kinase domain containing protein
LOC_Os01g04520OsAffx.10881.2.S1_x_at1/111+2011623..2014859Protein kinase domain containing protein
LOC_Os01g04530OsAffx.23111.1.S1_s_at11/111+2018217..2020407hypothetical protein
LOC_Os01g04530OsAffx.23111.2.S1_at1/111+2018217..2020407hypothetical protein
LOC_Os01g04540NANA1+2020681..2022979protein kinase family protein, putative, expressed
LOC_Os01g04550Os.27011.1.A1_s_at11/111+2032920..2034972serine/threonine protein kinase, putative, expressed
LOC_Os01g04560OsAffx.10906.2.A1_at11/111+2038102..2039572expressed protein
LOC_Os01g04570Os.26983.1.S1_s_at11/111+2045519..2049320Protein kinase domain containing protein, expressed
LOC_Os01g04580Os.6149.1.S1_at11/111+2050385..2054438Protein kinase domain containing protein, expressed
LOC_Os01g04590Os.33939.1.A1_at9/111+2056111..2059077expressed protein
LOC_Os01g04600Os.27936.1.A1_at10/111+2060417..2062797expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10906.2.A1_at--265--9211Chr01:2039098..2039122 (25 bp)
TGCCAACCTGGTCGACAGCTCAGCA
LOC_Os01g04560
OsAffx.10906.2.A1_at--445--2631Chr01:2039102..2039126 (25 bp)
AACCTGGTCGACAGCTCAGCATGCG
LOC_Os01g04560
OsAffx.10906.2.A1_at--82--3911Chr01:2039105..2039129 (25 bp)
CTGGTCGACAGCTCAGCATGCGCCG
LOC_Os01g04560
OsAffx.10906.2.A1_at--190--10551Chr01:2039285..2039309 (25 bp)
TTCATGTCCCTGAACCGGATGTATG
LOC_Os01g04560
OsAffx.10906.2.A1_at--373--3511Chr01:2039287..2039311 (25 bp)
CATGTCCCTGAACCGGATGTATGAT
LOC_Os01g04560
OsAffx.10906.2.A1_at--912--2611Chr01:2039297..2039321 (25 bp)
AACCGGATGTATGATCCCGGTGGCC
LOC_Os01g04560
OsAffx.10906.2.A1_at--1063--3951Chr01:2039300..2039324 (25 bp)
CGGATGTATGATCCCGGTGGCCCCA
LOC_Os01g04560
OsAffx.10906.2.A1_at--64--8771Chr01:2039304..2039328 (25 bp)
TGTATGATCCCGGTGGCCCCAAGCG
LOC_Os01g04560
OsAffx.10906.2.A1_at--981--10111Chr01:2039306..2039330 (25 bp)
TATGATCCCGGTGGCCCCAAGCGGG
LOC_Os01g04560
OsAffx.10906.2.A1_at--1077--4591Chr01:2039424..2039448 (25 bp)
GCGGGTTTCTGCTCGAGTGGGCGGC
LOC_Os01g04560
OsAffx.10906.2.A1_at--618--8311Chr01:2039515..2039539 (25 bp)
GGCGTTCGGGTGCTTCTGCCCCGGT
LOC_Os01g04560
Target Sequence 
TGCCAACCTGGTCGACAGCTCAGCATGCGCCGCCACCCGGTTCAACATGTCCAGCATCCTCGTGCTCTCGCTGCTCGCCG
TCAGCCGCGCCAACTCGGAGCTCCTCTTCTCCGCGAACTGCTCGCGGACGCCGCCGACGGGGTCGCTTCCGGTGAACTGC
ACCGGTTTCAGCGGCGGCGGCGAGTGGTTCATGTCCCTGAACCGGATGTATGATCCCGGTGGCCCCAAGCGGGCGGTGGA
CACGGTGGGTTGCCTGTACTCGGTGGTGCCCGTGCTGCCATGGTCGGAGCTGAGATCGGCGGGAGACTACGCGGGGTTCG
TGAGGCGCGGGTTTCTGCTCGAGTGGGCGGCGGTGCCGGGCGACTGCGCGGCGTGCAACGGCAGCGGCGGGGAGTGCCGC
TACGACGCCGGCGCCATGGCGTTCGGGTGCTTCTGCCCCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10906.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis