Browse Element(s) Details


OsAffx.23111.2.S1_at

Description tigr:9629.m00359
TID=OsAffx.23111.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0440911/11protein kinase family protein, putative, expressed
LOC_Os01g045301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04340Os.36328.1.S1_at11/111+1930919..193172616.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04350Os.14405.1.S1_at11/111+1937814..1938713Hsp20/alpha crystallin family protein, expressed
LOC_Os01g04360OsAffx.10905.3.S1_at11/111+1941063..194181316.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04370Os.4775.2.S1_at11/111+1945553..194638916.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04380Os.4775.1.S1_at11/111+1948732..194948516.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04380Os.57467.1.S1_x_at1/111+1948732..194948516.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04390Os.51285.1.S1_at11/111+1951950..1952727expressed protein
LOC_Os01g04409OsAffx.23111.2.S1_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04409OsAffx.23111.1.S1_s_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04409Os.14959.1.S1_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04430OsAffx.10906.3.A1_at11/111+1965125..1967340hypothetical protein
LOC_Os01g04430OsAffx.10906.3.A1_x_at11/111+1965125..1967340hypothetical protein
LOC_Os01g04440OsAffx.23109.1.S1_at10/111+1970501..1973993hypothetical protein
LOC_Os01g04440OsAffx.10096.1.S1_x_at1/111+1970501..1973993hypothetical protein
LOC_Os01g04450Os.53345.1.S1_at11/111+1974225..1979286Protein kinase domain containing protein, expressed
LOC_Os01g04460OsAffx.1929.1.S1_at11/111+1981069..1983196Protein kinase domain containing protein
LOC_Os01g04470OsAffx.23110.1.S1_at11/111+1985533..1988050hypothetical protein
LOC_Os01g04470OsAffx.10855.1.S1_at2/111+1985533..1988050hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23111.2.S1_at--931--10671Chr01:1959817..1959841 (25 bp)
TTGCCGGTGCTGGAACCGCCTGATG
LOC_Os01g04409
OsAffx.23111.2.S1_at--202--5672Chr01:2018924..2018948 (25 bp)
GACATCTTCTGGTAAGTTCACCCTC
LOC_Os01g04530
OsAffx.23111.2.S1_at--287--10451Chr01:1959700..1959724 (25 bp)
TTCACCCTCCCTGAAACTATTAGGA
LOC_Os01g04409
OsAffx.23111.2.S1_at--285--6891Chr01:1959651..1959675 (25 bp)
GTATATCCTGATACTTCCGATCTCC
LOC_Os01g04409
OsAffx.23111.2.S1_at--540--10651Chr01:1959637..1959661 (25 bp)
TTCCGATCTCCAAGCGAGTACTAGT
LOC_Os01g04409
OsAffx.23111.2.S1_at--1030--6951Chr01:1959614..1959638 (25 bp)
GTAGAATACGGTTCTCGCTCATCAG
LOC_Os01g04409
OsAffx.23111.2.S1_at--870--4131Chr01:1959599..1959623 (25 bp)
CGCTCATCAGCGTGTAGGACAGGGA
LOC_Os01g04409
OsAffx.23111.2.S1_at--722--3051Chr01:1959575..1959599 (25 bp)
AATCTGTCGATTGGCTGATAGGGTC
LOC_Os01g04409
OsAffx.23111.2.S1_at--963--8831Chr01:1959560..1959584 (25 bp)
TGATAGGGTCGTCATCTTGCCCAAT
LOC_Os01g04409
OsAffx.23111.2.S1_at--1024--1071Chr01:1959476..1959500 (25 bp)
AGTGGACCATGACCGTCCTTTCGCA
LOC_Os01g04409
OsAffx.23111.2.S1_at--356--3071Chr01:1959422..1959446 (25 bp)
AATCTTCGATCCTGTTCTGGTACAT
LOC_Os01g04409
Target Sequence 
TTGCCGGTGCTGGAACCGCCTGATGGCAAGGCGAACGCCAGCAGGTATGTGGAGCTCGTGGGTGGAGGCTTCCTCATAAC
ATGGGACCTGCCACCGCCAGTGACATCTTCTGGTAAGTTCACCCTCCCTGAAACTATTAGGATCAAGTTCGTATAGAAAA
TCCACTGTATATCCTGATACTTCCGATCTCCAAGCGAGTACTAGTAGAATACGGTTCTCGCTCATCAGCGTGTAGGACAG
GGAATCTGTCGATTGGCTGATAGGGTCGTCATCTTGCCCAATCGTGGCGGCTGGGCAACAGGGATGAGCAAGAATTAAAC
TAGAATTAAAGTGATCAAAGCAGTGGACCATGACCGTCCTTTCGCATTCCATCTCACTCCGGTGCCATTCCTTCCAATCT
TCGATCCTGTTCTGGTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23111.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis