Browse Element(s) Details


OsAffx.23109.1.S1_at

Description tigr:9629.m00362
TID=OsAffx.23109.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0444010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04370Os.4775.2.S1_at11/111+1945553..194638916.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04380Os.4775.1.S1_at11/111+1948732..194948516.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04380Os.57467.1.S1_x_at1/111+1948732..194948516.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04390Os.51285.1.S1_at11/111+1951950..1952727expressed protein
LOC_Os01g04409OsAffx.23111.2.S1_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04409OsAffx.23111.1.S1_s_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04409Os.14959.1.S1_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04430OsAffx.10906.3.A1_at11/111+1965125..1967340hypothetical protein
LOC_Os01g04430OsAffx.10906.3.A1_x_at11/111+1965125..1967340hypothetical protein
LOC_Os01g04440OsAffx.23109.1.S1_at10/111+1970501..1973993hypothetical protein
LOC_Os01g04440OsAffx.10096.1.S1_x_at1/111+1970501..1973993hypothetical protein
LOC_Os01g04450Os.53345.1.S1_at11/111+1974225..1979286Protein kinase domain containing protein, expressed
LOC_Os01g04460OsAffx.1929.1.S1_at11/111+1981069..1983196Protein kinase domain containing protein
LOC_Os01g04470OsAffx.23110.1.S1_at11/111+1985533..1988050hypothetical protein
LOC_Os01g04470OsAffx.10855.1.S1_at2/111+1985533..1988050hypothetical protein
LOC_Os01g04480OsAffx.10907.1.S1_at11/111+1990355..1993659Protein kinase domain containing protein, expressed
LOC_Os01g04490NANA1+1995229..1999941Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23109.1.S1_at--273--2211Chr01:1971758..1971782 (25 bp)
ACAACTGCAGCCAGAGTCGACGGCA
LOC_Os01g04440
OsAffx.23109.1.S1_at--685--4911Chr01:1971733..1971757 (25 bp)
GCTTCCAATCTCTTGGGCGCCCGTG
LOC_Os01g04440
OsAffx.23109.1.S1_at--192--691Chr01:1971647..1971671 (25 bp)
ATGACGATTTCAGACAACTGCCGGG
LOC_Os01g04440
OsAffx.23109.1.S1_at--499--7551Chr01:1971576..1971600 (25 bp)
GTGGCGAAGAACTACGAGCGGCTCA
LOC_Os01g04440
OsAffx.23109.1.S1_at--479--3931Chr01:1971481..1971505 (25 bp)
CGGCGGCTGGTGTCGGGTGAATGTC
LOC_Os01g04440
OsAffx.23109.1.S1_at--1052--5271Chr01:1971426..1971450 (25 bp)
GAAGGCCTGACGTCCTCCGGATTCA
LOC_Os01g04440
OsAffx.23109.1.S1_at--392--3811NONE
CTCCGGATTCACGTGTGTTGGTACA
NONE
OsAffx.23109.1.S1_at--745--7411Chr01:1970577..1970599 (23 bp)
GTGTTGGTACACTTAGCTCAATCAA
LOC_Os01g04440
OsAffx.23109.1.S1_at--758--1571Chr01:1970563..1970587 (25 bp)
AGCTCAATCAATATTATCGGTGGTG
LOC_Os01g04440
OsAffx.23109.1.S1_at--1003--151Chr01:1970551..1970575 (25 bp)
ATTATCGGTGGTGATGCATTGGTTA
LOC_Os01g04440
OsAffx.23109.1.S1_at--599--6331Chr01:1970539..1970563 (25 bp)
GATGCATTGGTTAGTGTTCAGGAAA
LOC_Os01g04440
Target Sequence 
ACAACTGCAGCCAGAGTCGACGGCAGCTTCCAATCTCTTGGGCGCCCGTGAGTTGTGCGAAAAATGAATCGTCCAACTCG
TATGCCTGGCTTGCGGGGAAGTACAAGCCTGATGACGATTTCAGACAACTGCCGGGGAACTGCACGGTGTCAATGATCCC
GGTGCTGGGGTACGACGGTGCGGTGGCGAAGAACTACGAGCGGCTCATCAAGGGTGGATTTCTTCTCGACTACACGGCCG
CGGCGGGGCCGGACGATTGCGAAGATTGCTCGAGGAGCGGCGGCTGGTGTCGGGTGAATGTCACCTACGATGGGCTAGAG
TGCCAATGCCCCGAAGGCCTGACGTCCTCCGGATTCACGTGTGTTGGTACACTTAGCTCAATCAATATTATCGGTGGTGA
TGCATTGGTTAGTGTTCAGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis