Browse Element(s) Details


Os.14959.1.S1_at

Description gb:AK065470.1
DB_XREF= gi:32975488
TID=Os.14959.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14959 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013020L24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013020L24, full insert sequence.
FL= gb:AK065470.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0440911/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04340Os.36328.1.S1_at11/111+1930919..193172616.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04350Os.14405.1.S1_at11/111+1937814..1938713Hsp20/alpha crystallin family protein, expressed
LOC_Os01g04360OsAffx.10905.3.S1_at11/111+1941063..194181316.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04370Os.4775.2.S1_at11/111+1945553..194638916.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04380Os.4775.1.S1_at11/111+1948732..194948516.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04380Os.57467.1.S1_x_at1/111+1948732..194948516.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04390Os.51285.1.S1_at11/111+1951950..1952727expressed protein
LOC_Os01g04409OsAffx.23111.2.S1_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04409OsAffx.23111.1.S1_s_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04409Os.14959.1.S1_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04430OsAffx.10906.3.A1_at11/111+1965125..1967340hypothetical protein
LOC_Os01g04430OsAffx.10906.3.A1_x_at11/111+1965125..1967340hypothetical protein
LOC_Os01g04440OsAffx.23109.1.S1_at10/111+1970501..1973993hypothetical protein
LOC_Os01g04440OsAffx.10096.1.S1_x_at1/111+1970501..1973993hypothetical protein
LOC_Os01g04450Os.53345.1.S1_at11/111+1974225..1979286Protein kinase domain containing protein, expressed
LOC_Os01g04460OsAffx.1929.1.S1_at11/111+1981069..1983196Protein kinase domain containing protein
LOC_Os01g04470OsAffx.23110.1.S1_at11/111+1985533..1988050hypothetical protein
LOC_Os01g04470OsAffx.10855.1.S1_at2/111+1985533..1988050hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14959.1.S1_at--624--1351Chr01:1955179..1955203 (25 bp)
AGAGATCGGCTATGAGACTGACAGT
LOC_Os01g04409
Os.14959.1.S1_at--601--4232Chr04:788862..788886 (25 bp)
CCGAGCTGGCCTTTCAGTGCTTGCA
NONE
Os.14959.1.S1_at--503--9871Chr01:1954964..1954988 (25 bp)
TACAGTATTCGCCTGACTCAGTAAT
LOC_Os01g04409
Os.14959.1.S1_at--451--311Chr01:1954928..1954952 (25 bp)
ATAGCCAATCTACTAACCACTCGGT
LOC_Os01g04409
Os.14959.1.S1_at--107--9811Chr01:1954915..1954939 (25 bp)
TAACCACTCGGTAGCATCAAACTCT
LOC_Os01g04409
Os.14959.1.S1_at--1057--7931Chr01:1954849..1954873 (25 bp)
GGATAACTAAGTTGTCCCCTCTTGG
LOC_Os01g04409
Os.14959.1.S1_at--752--4152Chr04:789208..789232 (25 bp)
CCCCTCTTGGTTGATGGACTAATTA
NONE
Os.14959.1.S1_at--915--331Chr01:1954744..1954768 (25 bp)
ATACAGGGTTCAAACAATCTCGTGT
LOC_Os01g04409
Os.14959.1.S1_at--890--3051Chr01:1954729..1954753 (25 bp)
AATCTCGTGTAATCTAGTGTTCAGT
LOC_Os01g04409
Os.14959.1.S1_at--279--7651Chr01:1954671..1954695 (25 bp)
GGGAGAACACATCCCATTGTTACCC
LOC_Os01g04409
Os.14959.1.S1_at--705--6772Chr04:789417..789441 (25 bp)
GTTACCCTAACTAGAGGTTGCAATT
NONE
Target Sequence 
AGAGATCGGCTATGAGACTGACAGTGAAACAAAGAGGATGGTAGATCTGGTGGCCGAGCTGGCCTTTCAGTGCTTGCAGA
TGGACAGAGANAGCAGGCCACCAATTAAGGAGGTAGTGGAGGTCCTGAATTGTATCAAGAACGGGGAATGTCCAGCGGAA
AAGATGAACAAGAATGCGTCTCCAAAGGAAGATTCNCATCTGCTGAAGGACANCCTACAGTATTCGCCTGACTCAGTAAT
CCATAGATTTCATAGCCAATCTACTAACCACTCGGTAGCATCAAACTCTAGCGGATGATGAGAAACTTTGTATTGATTCT
GATGAAATAAGGATAACTAAGTTGTCCCCTCTTGGTTGATGGACTAATTAATACTACAAGTGTTTGACTATGAGCTTGGC
AGAAATTCAGACAATTGGTGAATGCGGTAGGAGAAATACAGGGTTCAAACAATCTCGTGTAATCTAGTGTTCAGTGTGTT
CATGATTTCAGGTTAGCGAGTGGTATCAGGGAGAACACATCCCATTGTTACCCTAACTAGAGGTTGCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14959.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis