Browse Element(s) Details


Os.51285.1.S1_at

Description gb:AK062428.1
DB_XREF= gi:32972446
TID=Os.51285.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51285 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-102-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-H06, full insert sequence.
FL= gb:AK062428.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0439011/11expressed protein
LOC_Os02g571401/11expressed protein
LOC_Os03g532801/11WD-40 repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04330Os.36767.1.S1_at11/111+1927818..1928706EF hand family protein, expressed
LOC_Os01g04340Os.36328.1.S1_at11/111+1930919..193172616.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04350Os.14405.1.S1_at11/111+1937814..1938713Hsp20/alpha crystallin family protein, expressed
LOC_Os01g04360OsAffx.10905.3.S1_at11/111+1941063..194181316.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04370Os.4775.2.S1_at11/111+1945553..194638916.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04380Os.4775.1.S1_at11/111+1948732..194948516.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04380Os.57467.1.S1_x_at1/111+1948732..194948516.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04390Os.51285.1.S1_at11/111+1951950..1952727expressed protein
LOC_Os01g04409OsAffx.23111.2.S1_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04409OsAffx.23111.1.S1_s_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04409Os.14959.1.S1_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04430OsAffx.10906.3.A1_at11/111+1965125..1967340hypothetical protein
LOC_Os01g04430OsAffx.10906.3.A1_x_at11/111+1965125..1967340hypothetical protein
LOC_Os01g04440OsAffx.23109.1.S1_at10/111+1970501..1973993hypothetical protein
LOC_Os01g04440OsAffx.10096.1.S1_x_at1/111+1970501..1973993hypothetical protein
LOC_Os01g04450Os.53345.1.S1_at11/111+1974225..1979286Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005739cellular_componentmitochondrion
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51285.1.S1_at--994--9571Chr01:1952520..1952544 (25 bp)
TCTTGACCAGCAGAAGCTCTTTGGA
LOC_Os01g04390
Os.51285.1.S1_at--572--8931Chr01:1952439..1952463 (25 bp)
TGACCTGCCGGAACGCGTCGCTGTG
LOC_Os01g04390
Os.51285.1.S1_at--67--7251Chr01:1952209..1952233 (25 bp)
GTCGCCATCCCGGAGTGAGCATGGA
LOC_Os01g04390
Os.51285.1.S1_at--823--8431Chr01:1952173..1952197 (25 bp)
TGACATTCCGGTAAAATCCGTTGGA
LOC_Os01g04390
Os.51285.1.S1_at--515--2012Chr03:30530063..30530317 (25 bp)
ACTCTAGTGTAGCTTTGCGTGTTGC
LOC_Os03g53280
Os.51285.1.S1_at--884--6832Chr02:34987000..34987197 (25 bp)
GTTTCTTTCTTTGTTCGTTGCTTGC
LOC_Os02g57140
Os.51285.1.S1_at--903--10711Chr01:1952074..1952098 (25 bp)
TTGCTTGCTGCAGTATGTGACTATA
LOC_Os01g04390
Os.51285.1.S1_at--942--6331Chr01:1952040..1952064 (25 bp)
GATGCTTCTATCACTGTTCTGTAAT
LOC_Os01g04390
Os.51285.1.S1_at--398--9691Chr01:1952013..1952037 (25 bp)
TCAACGATGTCGGTGCATAACAGCA
LOC_Os01g04390
Os.51285.1.S1_at--271--2491Chr01:1951995..1952019 (25 bp)
AACAGCATACTTGAACATGTCCAGT
LOC_Os01g04390
Os.51285.1.S1_at--875--2111Chr01:1951981..1952005 (25 bp)
ACATGTCCAGTGTCTTTGCTGTGAA
LOC_Os01g04390
Target Sequence 
TCTTGACCAGCAGAAGCTCTTTGGAGGAGCTCCTGGTGTCGGACGACGCCGACGACGACGGCGCCATCGACGACGCCGCC
GTGACCTGCCGGAACGCGTCGCTGTGCGCCAAGAAAGATGGTCAGGCGCCGGTGGTCGTGNTACCACCNCCGGGGCTGCA
TCACCCAGTGATGGNTCGGCCGGCGCACGGCATGGTGACGACGTCGTCGGGCGGCGGCCGTGATGGTGCGGCCGTGCAGT
GCCGGCGGCGGTTCATGTTCGGCGGGCTCCGGCGGCGGCTGATGATGAGGAGACCGTGGCGGCCGGTGCTCGTCGCCATC
CCGGAGTGAGCATGGACAAACCAGAAATGACATTCCGGTAAAATCCGTTGGAATTGAATCAATCGATTGCAGTATGCATA
TACTCTAGTGTAGCTTTGCGTGTTGCTCGGTTTCTTTCTTTGTTCGTTGCTTGCTGCAGTATGTGACTATACTAGCTATT
GATGCTTCTATCACTGTTCTGTAATCATCAACGATGTCGGTGCATAACAGCATACTTGAACATGTCCAGTGTCTTTGCTG
TGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51285.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis