Browse Element(s) Details


Os.14405.1.S1_at

Description gb:AK062091.1
DB_XREF= gi:32972109
TID=Os.14405.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14405 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013041H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-044-G11, full insert sequence.
FL= gb:AK062091.1 gb:AK065690.1 gb:AK064849.1 gb:AK119599.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0435011/11Hsp20/alpha crystallin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04310NANA1+1916551..1917233transposon protein, putative, unclassified
LOC_Os01g04320OsAffx.10903.2.S1_at11/111+1922127..1923305transposon protein, putative, unclassified
LOC_Os01g04330Os.36767.1.S1_at11/111+1927818..1928706EF hand family protein, expressed
LOC_Os01g04340Os.36328.1.S1_at11/111+1930919..193172616.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04350Os.14405.1.S1_at11/111+1937814..1938713Hsp20/alpha crystallin family protein, expressed
LOC_Os01g04360OsAffx.10905.3.S1_at11/111+1941063..194181316.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04370Os.4775.2.S1_at11/111+1945553..194638916.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04380Os.4775.1.S1_at11/111+1948732..194948516.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04380Os.57467.1.S1_x_at1/111+1948732..194948516.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04390Os.51285.1.S1_at11/111+1951950..1952727expressed protein
LOC_Os01g04409OsAffx.23111.2.S1_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04409OsAffx.23111.1.S1_s_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04409Os.14959.1.S1_at11/111+1954649..1964253protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0009408biological_processresponse to heat
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14405.1.S1_at--613--1631Chr01:1938225..1938249 (25 bp)
AGCGGTCGCACCACATCGAGCGCAG
LOC_Os01g04350
Os.14405.1.S1_at--1097--7191Chr01:1938296..1938320 (25 bp)
GTCGACCTCGTCAGGGCGTCCATGG
LOC_Os01g04350
Os.14405.1.S1_at--268--1771Chr01:1938341..1938365 (25 bp)
ACCGTGCCCAAGGTGGTCACTGACA
LOC_Os01g04350
Os.14405.1.S1_at--921--1051Chr01:1938351..1938375 (25 bp)
AGGTGGTCACTGACAAGCAGCCCGC
LOC_Os01g04350
Os.14405.1.S1_at--1073--5291Chr01:1938427..1938451 (25 bp)
GAAGGCAATCGAAGCCAGCCCGTAG
LOC_Os01g04350
Os.14405.1.S1_at--918--2651Chr01:1938438..1938462 (25 bp)
AAGCCAGCCCGTAGTGATGCGATGA
LOC_Os01g04350
Os.14405.1.S1_at--779--10071Chr01:1938449..1938473 (25 bp)
TAGTGATGCGATGAACACACACACA
LOC_Os01g04350
Os.14405.1.S1_at--206--3451Chr01:1938484..1938508 (25 bp)
CAGTCAGTCAATCCAACGATCCGTA
LOC_Os01g04350
Os.14405.1.S1_at--374--4031Chr01:1938515..1938539 (25 bp)
CGTTGTCGTCGATGATAAGTTCAAA
LOC_Os01g04350
Os.14405.1.S1_at--138--1131Chr01:1938539..1938563 (25 bp)
AGTGCTTGCGAGTAAGGTGCTTGCT
LOC_Os01g04350
Os.14405.1.S1_at--349--2271Chr01:1938631..1938655 (25 bp)
AAATCATACTATTTGCTTGATGCAA
LOC_Os01g04350
Target Sequence 
AGCGGTCGCACCACATCGAGCGCAGCTGCGCCACCTTCTTCGGCAGGTTCCACCTCCCCGACGACGCCGTCGTCGACCTC
GTCAGGGCGTCCATGGACGGCGGCATGCTCACCGTCACCGTGCCCAAGGTGGTCACTGACAAGCAGCCCGCCATCGCCGC
CGCCGCACCCGTCCCCGCCGTCGTCGCACCCGCTGNCGAGGCGAAGGCAATCGAAGCCAGCCCGTAGTGATGCGATGAAC
ACACACACACACACACAGACAGTCAGTCAATCCAACGATCCGTANGTATACGTTGTCGTCGATGATAAGTTCAAAGTGCT
TGCGAGTAAGGTGCTTGCTGTNCTTTTGGTTTAATTACCTNTGGTGTGANNNAANGCTTTCTCGATGTAAGACAAGAAAG
CTAGTAGNNNCAAAATCATACTATTTGCTTGATGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14405.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis