Browse Element(s) Details


OsAffx.23111.1.S1_s_at

Description tigr:9629.m00371
TID=OsAffx.23111.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0453011/11hypothetical protein
LOC_Os01g0440911/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04480OsAffx.10907.1.S1_at11/111+1990355..1993659Protein kinase domain containing protein, expressed
LOC_Os01g04490NANA1+1995229..1999941Protein kinase domain containing protein, expressed
LOC_Os01g04500Os.53461.1.S1_at10/111+2000185..2000686hypothetical protein
LOC_Os01g04510Os.6227.2.S1_x_at1/111+2002954..2004056hypothetical protein
LOC_Os01g04520Os.53382.1.S1_at6/111+2011623..2014859Protein kinase domain containing protein
LOC_Os01g04520OsAffx.10881.2.S1_x_at1/111+2011623..2014859Protein kinase domain containing protein
LOC_Os01g04530OsAffx.23111.1.S1_s_at11/111+2018217..2020407hypothetical protein
LOC_Os01g04530OsAffx.23111.2.S1_at1/111+2018217..2020407hypothetical protein
LOC_Os01g04540NANA1+2020681..2022979protein kinase family protein, putative, expressed
LOC_Os01g04550Os.27011.1.A1_s_at11/111+2032920..2034972serine/threonine protein kinase, putative, expressed
LOC_Os01g04560OsAffx.10906.2.A1_at11/111+2038102..2039572expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23111.1.S1_s_at--1068--8352Chr01:2018427..2018451 (25 bp)
GGCGTCGCAACTCTTCGAAGCTCTA
LOC_Os01g04530
OsAffx.23111.1.S1_s_at--801--7632Chr01:2018488..2018512 (25 bp)
GGGACCGTACTATGCTCGTCTTTGA
LOC_Os01g04530
OsAffx.23111.1.S1_s_at--457--7012Chr01:2018494..2018518 (25 bp)
GTACTATGCTCGTCTTTGATGTCCA
LOC_Os01g04530
OsAffx.23111.1.S1_s_at--896--10252Chr01:2018508..2018532 (25 bp)
TTTGATGTCCATAAGCTAGCTCGCC
LOC_Os01g04530
OsAffx.23111.1.S1_s_at--211--7272Chr01:2018514..2018538 (25 bp)
GTCCATAAGCTAGCTCGCCTGAATA
LOC_Os01g04530
OsAffx.23111.1.S1_s_at--994--4252Chr01:2018545..2018569 (25 bp)
CCGGCTGCAGTATCCCAGTGTTTAA
LOC_Os01g04530
OsAffx.23111.1.S1_s_at--756--3452Chr01:2018560..2018584 (25 bp)
CAGTGTTTAACACCTTCGCCAAGCT
LOC_Os01g04530
OsAffx.23111.1.S1_s_at--405--9672Chr01:2018590..2018614 (25 bp)
TCACGTTTACAATCAGCCCTTCCAA
LOC_Os01g04530
OsAffx.23111.1.S1_s_at--84--6352Chr01:2018692..2018716 (25 bp)
GATGCGGTAACAACACGTTTGCTCG
LOC_Os01g04530
OsAffx.23111.1.S1_s_at--489--8032Chr01:2018738..2018762 (25 bp)
GGAGGGCGACTACGACAAGTACTAT
LOC_Os01g04530
OsAffx.23111.1.S1_s_at--1152--5432Chr01:2018828..2018852 (25 bp)
GAACGCCAGCAGGTATGTGGAGCTC
LOC_Os01g04530
Target Sequence 
GGCGTCGCAACTCTTCGAAGCTCTACGGACACCGGGTTTGATATCATCAACATATCATATGGGGACCGTACTATGCTCGT
CTTTGATGTCCATAAGCTAGCTCGCCTGAATAGCTCCACCGGCTGCAGTATCCCAGTGTTTAACACCTTCGCCAAGCTGC
CCGTCACGTTTACAATCAGCCCTTCCAATCACAACCTCGTCTTCTACAACTGCACCAAGGCGCCGCCGGCGGAGCAGCAG
CAAAAACTGGGGCTCGTGGAGACGAGATGCGGTAACAACACGTTTGCTCGGCTGGGAGGGCGTTACGACGGGGAGGGCGA
CTACGACAAGTACTATTTGGAAGGCTGCAGCAGAAACAGCACCGTCTTCTCGCCGGTGCTGAAGCCGCCTGATGGCAAGG
CGAACGCCAGCAGGTATGTGGAGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23111.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis