Browse Element(s) Details


Os.27011.1.A1_s_at

Description gb:CB633485
DB_XREF= gi:29628474
DB_XREF=OSIIEb12F19.r
CLONE=OSIIEb12F19
TID=Os.27011.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.27011 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_176870.1 (A.thaliana) kinase, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0455011/11serine/threonine protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04520Os.53382.1.S1_at6/111+2011623..2014859Protein kinase domain containing protein
LOC_Os01g04520OsAffx.10881.2.S1_x_at1/111+2011623..2014859Protein kinase domain containing protein
LOC_Os01g04530OsAffx.23111.1.S1_s_at11/111+2018217..2020407hypothetical protein
LOC_Os01g04530OsAffx.23111.2.S1_at1/111+2018217..2020407hypothetical protein
LOC_Os01g04540NANA1+2020681..2022979protein kinase family protein, putative, expressed
LOC_Os01g04550Os.27011.1.A1_s_at11/111+2032920..2034972serine/threonine protein kinase, putative, expressed
LOC_Os01g04560OsAffx.10906.2.A1_at11/111+2038102..2039572expressed protein
LOC_Os01g04570Os.26983.1.S1_s_at11/111+2045519..2049320Protein kinase domain containing protein, expressed
LOC_Os01g04580Os.6149.1.S1_at11/111+2050385..2054438Protein kinase domain containing protein, expressed
LOC_Os01g04590Os.33939.1.A1_at9/111+2056111..2059077expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27011.1.A1_s_at--55--2211Chr01:2034440..2034464 (25 bp)
ACAAGTATTACCTATGCATCGACCA
LOC_Os01g04550
Os.27011.1.A1_s_at--930--4971Chr01:2034455..2034479 (25 bp)
GCATCGACCAACAATAACCCAGGTT
LOC_Os01g04550
Os.27011.1.A1_s_at--349--10471Chr01:2034543..2034648 (25 bp)
TTACTAGACCATTCAGTTCATGAGC
LOC_Os01g04550
Os.27011.1.A1_s_at--203--9651Chr01:2034636..2034660 (25 bp)
TCAGTTCATGAGCTGAATACAGAAA
LOC_Os01g04550
Os.27011.1.A1_s_at--61--7071Chr01:2034661..2034685 (25 bp)
GTAAGAGTTCTACTGGAAATACCAA
LOC_Os01g04550
Os.27011.1.A1_s_at--49--4771Chr01:2034687..2034711 (25 bp)
GCTGCACAAGCTTAGTGGAGTGCTA
LOC_Os01g04550
Os.27011.1.A1_s_at--1065--2631Chr01:2034726..2034750 (25 bp)
AAGCCTCGTGAATTCAAAAGACCCT
LOC_Os01g04550
Os.27011.1.A1_s_at--79--9011Chr01:2034734..2034758 (25 bp)
TGAATTCAAAAGACCCTACAGTGAC
LOC_Os01g04550
Os.27011.1.A1_s_at--767--371Chr01:2034830..2034854 (25 bp)
ATCACACATTCATGGCATTGCCTAG
LOC_Os01g04550
Os.27011.1.A1_s_at--257--4951Chr01:2034844..2034868 (25 bp)
GCATTGCCTAGTGTAGTAGTGTCTT
LOC_Os01g04550
Os.27011.1.A1_s_at--892--6931Chr01:2034859..2034883 (25 bp)
GTAGTGTCTTTAAGGGAGCTGAATC
LOC_Os01g04550
Target Sequence 
ACAAGTATTACCTATGCATCGACCAACAATAACCCAGGTTTTAGATATGTTCGAGAGAGGTTTGGATGAACTGGAAATGC
CACCAAAACAAAATTTCAGTGAATTACTAGACCATTCAGTTCATGAGCTGAATACAGAAAGTAAGAGTTCTACTGGAAAT
ACCAAAGCTGCACAAGCTTAGTGGAGTGCTAAAGGTTGAGGAGACAAGCCTCGTGAATTCAAAAGACCCTACAGTGACTA
CCAACTATGCAACAAGATGATCTGCAGTATACAGAAAGTAAGACACAAGTCAAATTTTGGTATTGTATCATCACACATTC
ATGGCATTGCCTAGTGTAGTAGTGTCTTTAAGGGAGCTGAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27011.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis