Browse Element(s) Details


Os.53382.1.S1_at

Description gb:AK072359.1
DB_XREF= gi:32982382
TID=Os.53382.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53382 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023063C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023063C07, full insert sequence.
FL= gb:AK072359.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g045206/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04470OsAffx.23110.1.S1_at11/111+1985533..1988050hypothetical protein
LOC_Os01g04470OsAffx.10855.1.S1_at2/111+1985533..1988050hypothetical protein
LOC_Os01g04480OsAffx.10907.1.S1_at11/111+1990355..1993659Protein kinase domain containing protein, expressed
LOC_Os01g04490NANA1+1995229..1999941Protein kinase domain containing protein, expressed
LOC_Os01g04500Os.53461.1.S1_at10/111+2000185..2000686hypothetical protein
LOC_Os01g04510Os.6227.2.S1_x_at1/111+2002954..2004056hypothetical protein
LOC_Os01g04520Os.53382.1.S1_at6/111+2011623..2014859Protein kinase domain containing protein
LOC_Os01g04520OsAffx.10881.2.S1_x_at1/111+2011623..2014859Protein kinase domain containing protein
LOC_Os01g04530OsAffx.23111.1.S1_s_at11/111+2018217..2020407hypothetical protein
LOC_Os01g04530OsAffx.23111.2.S1_at1/111+2018217..2020407hypothetical protein
LOC_Os01g04540NANA1+2020681..2022979protein kinase family protein, putative, expressed
LOC_Os01g04550Os.27011.1.A1_s_at11/111+2032920..2034972serine/threonine protein kinase, putative, expressed
LOC_Os01g04560OsAffx.10906.2.A1_at11/111+2038102..2039572expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53382.1.S1_at--64--5371Chr01:2014473..2014497 (25 bp)
GAAGACTTATGTCCTAAAATTGCAG
LOC_Os01g04520
Os.53382.1.S1_at--1086--6971Chr01:2014561..2014585 (25 bp)
GTACCATCGGTTTCATTGCACCAGA
LOC_Os01g04520
Os.53382.1.S1_at--969--10331Chr01:2014591..2014615 (25 bp)
TTTCAAGAGGCTTCGGAGTTGTGTC
LOC_Os01g04520
Os.53382.1.S1_at--353--9751Chr01:2014697..2014721 (25 bp)
TAATTCTAGTGCATATTTCCCCAAC
LOC_Os01g04520
Os.53382.1.S1_at--902--6511Chr01:2014746..2014770 (25 bp)
GATTTGCAAAGCCATGAAGTCACAT
LOC_Os01g04520
Os.53382.1.S1_at--1090--371Chr01:2014797..2014821 (25 bp)
ATCACACTAGTTGGCCTGTGGTGCA
LOC_Os01g04520
Os.53382.1.S1_at--1010--5411Chr01:2014908..2014932 (25 bp)
GAAGCCGATCCTTTCATGTCATGCA
NONE
Os.53382.1.S1_at--711--10311Chr01:2014919..2014943 (25 bp)
TTTCATGTCATGCAGCGCCATCGTA
NONE
Os.53382.1.S1_at--979--1651Chr01:2014932..2014956 (25 bp)
AGCGCCATCGTATTTTTCATCTTAT
NONE
Os.53382.1.S1_at--981--111Chr01:2014989..2015013 (25 bp)
ATTCTATATATGTTCCGCCACTCAG
NONE
Os.53382.1.S1_at--785--8771Chr01:2014999..2015023 (25 bp)
TGTTCCGCCACTCAGCTAAAGTAAA
NONE
Target Sequence 
GAAGACTTATGTCCTAAAATTGCAGATTTTGGATTGGCAAAACTTTGCCACCTCAAGGATAGTGCCATCTCAATGGCTGA
AGCAAGAGGTACCATCGGTTTCATTGCACCAGAAGTATTTTCAAGAGGCTTCGGAGTTGTGTCAACTAAGTCAGATGTTT
ACAGTTATGGAATGATGCTGTTAGAGATGGTAGAAGGAAGGAAAAATGTTAAAACAAATACTGATAATTCTAGTGCATAT
TTCCCCAACTGGATTTATGATCATTTAGCGAAAGATTTGCAAAGCCATGAAGTCACATGCGAGAATGAAGAGATTGCGAG
GAAGATCACACTAGTTGGCCTGTGGTGCATACAAACTGCCCCCAGGAAATCGTCCTTCAATGAGTAAGGTCATAGAAATG
CTGGAGAAGAACATCAACGAATTGGAGATGCCCCCGAAGCCGATCCTTTCATGTCATGCAGCGCCATCGTATTTTTCATC
TTATTCTTAACTAAGAATTTTCTTTTGGGATGATTCATTCTATATATGTTCCGCCACTCAGCTAAAGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53382.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis