Browse Element(s) Details


OsAffx.23110.1.S1_at

Description tigr:9629.m00365
TID=OsAffx.23110.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0447011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04409OsAffx.23111.2.S1_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04409OsAffx.23111.1.S1_s_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04409Os.14959.1.S1_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04430OsAffx.10906.3.A1_at11/111+1965125..1967340hypothetical protein
LOC_Os01g04430OsAffx.10906.3.A1_x_at11/111+1965125..1967340hypothetical protein
LOC_Os01g04440OsAffx.23109.1.S1_at10/111+1970501..1973993hypothetical protein
LOC_Os01g04440OsAffx.10096.1.S1_x_at1/111+1970501..1973993hypothetical protein
LOC_Os01g04450Os.53345.1.S1_at11/111+1974225..1979286Protein kinase domain containing protein, expressed
LOC_Os01g04460OsAffx.1929.1.S1_at11/111+1981069..1983196Protein kinase domain containing protein
LOC_Os01g04470OsAffx.23110.1.S1_at11/111+1985533..1988050hypothetical protein
LOC_Os01g04470OsAffx.10855.1.S1_at2/111+1985533..1988050hypothetical protein
LOC_Os01g04480OsAffx.10907.1.S1_at11/111+1990355..1993659Protein kinase domain containing protein, expressed
LOC_Os01g04490NANA1+1995229..1999941Protein kinase domain containing protein, expressed
LOC_Os01g04500Os.53461.1.S1_at10/111+2000185..2000686hypothetical protein
LOC_Os01g04510Os.6227.2.S1_x_at1/111+2002954..2004056hypothetical protein
LOC_Os01g04520Os.53382.1.S1_at6/111+2011623..2014859Protein kinase domain containing protein
LOC_Os01g04520OsAffx.10881.2.S1_x_at1/111+2011623..2014859Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23110.1.S1_at--485--9211Chr01:1985857..1985881 (25 bp)
TCCAAGGGCTGCCATGTCATGACAG
LOC_Os01g04470
OsAffx.23110.1.S1_at--487--3851Chr01:1985932..1985956 (25 bp)
CTGAACCTCATCTTCTACAACTGCA
LOC_Os01g04470
OsAffx.23110.1.S1_at--994--10791Chr01:1986032..1986056 (25 bp)
TTGTTCGCGTCGGAGGGCATTACAG
LOC_Os01g04470
OsAffx.23110.1.S1_at--436--8291Chr01:1986047..1986071 (25 bp)
GGCATTACAGCGATTCTGGCAGCTA
LOC_Os01g04470
OsAffx.23110.1.S1_at--378--10611Chr01:1986060..1986084 (25 bp)
TTCTGGCAGCTATGAGGAGTACTCG
LOC_Os01g04470
OsAffx.23110.1.S1_at--389--2091Chr01:1986124..1986148 (25 bp)
ACATCATCTGGTGAGGCGAATGCGA
LOC_Os01g04470
OsAffx.23110.1.S1_at--570--1971Chr01:1986162..1986186 (25 bp)
ACTGATCAGTGATGGATTCCTCTTG
LOC_Os01g04470
OsAffx.23110.1.S1_at--830--5811Chr01:1987823..1987847 (25 bp)
GACCCCACTTTGCAGTATATCATTG
LOC_Os01g04470
OsAffx.23110.1.S1_at--1137--7571Chr01:1987898..1987922 (25 bp)
GGGCAGCTCAAGTACTTCGGCCTGG
LOC_Os01g04470
OsAffx.23110.1.S1_at--28--7691Chr01:1987922..1987946 (25 bp)
GGGTTCATGATGGTTCACCCCATCT
LOC_Os01g04470
OsAffx.23110.1.S1_at--459--2651Chr01:1987996..1988020 (25 bp)
CACACGTTTTCCTACCGTTCAAATG
LOC_Os01g04470
Target Sequence 
TCCAAGGGCTGCCATGTCATGACAGCCAACACCTCCTCCAAGGTCGGGCAACCTTTCTCGGTCAGCTCCGCCAACCTGAA
CCTCATCTTCTACAACTGCACGGCGGAGACGGCGGCGGCGGCGGTGCGGCGAGACGGCGGGCTTGTGGAGACGAAATGCA
GCGGCGGTGGCACGCTTGTTCGCGTCGGAGGGCATTACAGCGATTCTGGCAGCTATGAGGAGTACTCGGTGGAGGGATGC
GGCGCCACCCTCGTGCCGGTGCTGGGGACATCATCTGGTGAGGCGAATGCGAGCAGCTATGAGGAACTGATCAGTGATGG
ATTCCTCTTGACATGGCAGCCGCCGTCCGGTTTCATTGGAAAAACGAACGCCGACCCCACTTTGCAGTATATCATTGACT
CAGTAGTCAAGAGTCAAGACGTGCCCTTTGGGGCACTGCAGAATGACGGGCAGCTCAAGTACTTCGGCCTGGGGTTCATG
ATGGTTCACCCCATCTCTGCATCCTCGACAATTCGTCGCGACTTCCCGAGTCGGTCACCACTCACCACACGTTTTCCTAC
CGTTCAAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23110.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis