Browse Element(s) Details


OsAffx.1929.1.S1_at

Description tigr:9629.m00364
TID=OsAffx.1929.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0446011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04409OsAffx.23111.2.S1_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04409OsAffx.23111.1.S1_s_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04409Os.14959.1.S1_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04430OsAffx.10906.3.A1_at11/111+1965125..1967340hypothetical protein
LOC_Os01g04430OsAffx.10906.3.A1_x_at11/111+1965125..1967340hypothetical protein
LOC_Os01g04440OsAffx.23109.1.S1_at10/111+1970501..1973993hypothetical protein
LOC_Os01g04440OsAffx.10096.1.S1_x_at1/111+1970501..1973993hypothetical protein
LOC_Os01g04450Os.53345.1.S1_at11/111+1974225..1979286Protein kinase domain containing protein, expressed
LOC_Os01g04460OsAffx.1929.1.S1_at11/111+1981069..1983196Protein kinase domain containing protein
LOC_Os01g04470OsAffx.23110.1.S1_at11/111+1985533..1988050hypothetical protein
LOC_Os01g04470OsAffx.10855.1.S1_at2/111+1985533..1988050hypothetical protein
LOC_Os01g04480OsAffx.10907.1.S1_at11/111+1990355..1993659Protein kinase domain containing protein, expressed
LOC_Os01g04490NANA1+1995229..1999941Protein kinase domain containing protein, expressed
LOC_Os01g04500Os.53461.1.S1_at10/111+2000185..2000686hypothetical protein
LOC_Os01g04510Os.6227.2.S1_x_at1/111+2002954..2004056hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1929.1.S1_at--751--8551Chr01:1982601..1982625 (25 bp)
TGGAGTATCTGCACCAGGGCTGCAA
LOC_Os01g04460
OsAffx.1929.1.S1_at--553--7931Chr01:1982705..1982729 (25 bp)
GGATTAGCCAAGCTATGCCACCTCA
LOC_Os01g04460
OsAffx.1929.1.S1_at--410--6011Chr01:1982732..1982756 (25 bp)
GAGAGCATCCTTTCGATGGCGGAAG
LOC_Os01g04460
OsAffx.1929.1.S1_at--817--10411Chr01:1982775..1982799 (25 bp)
TTATTGCTCCAGAAGTATTCTCCAG
LOC_Os01g04460
OsAffx.1929.1.S1_at--258--3711Chr01:1982839..1982863 (25 bp)
CTACGGGATGCTGCTTTTGGAAATA
LOC_Os01g04460
OsAffx.1929.1.S1_at--484--7351Chr01:1982907..1982931 (25 bp)
GTGAAACATTTTTCCCACATTGGGT
LOC_Os01g04460
OsAffx.1929.1.S1_at--824--9311Chr01:1982919..1982943 (25 bp)
TCCCACATTGGGTTTATGACAGTCT
LOC_Os01g04460
OsAffx.1929.1.S1_at--310--2291Chr01:1983030..1983054 (25 bp)
AAATGACACCTGAAACTCGTCCTTC
LOC_Os01g04460
OsAffx.1929.1.S1_at--1052--9411Chr01:1983046..1983070 (25 bp)
TCGTCCTTCGATGAGCAGGGTCATA
LOC_Os01g04460
OsAffx.1929.1.S1_at--843--1111Chr01:1983092..1983116 (25 bp)
AGTGAACTAGAAATGCCGCCCAAAC
LOC_Os01g04460
OsAffx.1929.1.S1_at--119--4191Chr01:1983131..1983155 (25 bp)
CCCATCCACTCAACGAATGTTTCGT
LOC_Os01g04460
Target Sequence 
TGGAGTATCTGCACCAGGGCTGCAACACCCGCATCATCCATTTCGATATCAAGCCTCGCAACATCCTTCTTGATCATGAG
TTTTGTCCAAAAATTGCAGATTTTGGATTAGCCAAGCTATGCCACCTCAACGAGAGCATCCTTTCGATGGCGGAAGCGAG
AGGAACCATTGGTTTTATTGCTCCAGAAGTATTCTCCAGAGGATTCGGAGTTGTGTCAACCAAATCAGATGTCTATAGCT
ACGGGATGCTGCTTTTGGAAATAGTCAAAGTAAGAAAAAACATAAAAGGAATTGCAGATAATTTCAGTGAAACATTTTTC
CCACATTGGGTTTATGACAGTCTGGTGAGTGAGATGCAATGTTGTGAAACGGCATATGGAACCGAAGAGATTGCAAGAAA
GATGACCATAGTTGGACTGTGGTGCATACAAATGACACCTGAAACTCGTCCTTCGATGAGCAGGGTCATAGAGATGTTGG
AAAGGAGTATCAGTGAACTAGAAATGCCGCCCAAACCATTCCTCTGCTCCCCCATCCACTCAACGAATGTTTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1929.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis