Browse Element(s) Details


Os.53345.1.S1_at

Description gb:AK072170.1
DB_XREF= gi:32982193
TID=Os.53345.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53345 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013129P20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013129P20, full insert sequence.
FL= gb:AK072170.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0445011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04380Os.4775.1.S1_at11/111+1948732..194948516.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04380Os.57467.1.S1_x_at1/111+1948732..194948516.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04390Os.51285.1.S1_at11/111+1951950..1952727expressed protein
LOC_Os01g04409OsAffx.23111.2.S1_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04409OsAffx.23111.1.S1_s_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04409Os.14959.1.S1_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04430OsAffx.10906.3.A1_at11/111+1965125..1967340hypothetical protein
LOC_Os01g04430OsAffx.10906.3.A1_x_at11/111+1965125..1967340hypothetical protein
LOC_Os01g04440OsAffx.23109.1.S1_at10/111+1970501..1973993hypothetical protein
LOC_Os01g04440OsAffx.10096.1.S1_x_at1/111+1970501..1973993hypothetical protein
LOC_Os01g04450Os.53345.1.S1_at11/111+1974225..1979286Protein kinase domain containing protein, expressed
LOC_Os01g04460OsAffx.1929.1.S1_at11/111+1981069..1983196Protein kinase domain containing protein
LOC_Os01g04470OsAffx.23110.1.S1_at11/111+1985533..1988050hypothetical protein
LOC_Os01g04470OsAffx.10855.1.S1_at2/111+1985533..1988050hypothetical protein
LOC_Os01g04480OsAffx.10907.1.S1_at11/111+1990355..1993659Protein kinase domain containing protein, expressed
LOC_Os01g04490NANA1+1995229..1999941Protein kinase domain containing protein, expressed
LOC_Os01g04500Os.53461.1.S1_at10/111+2000185..2000686hypothetical protein
LOC_Os01g04510Os.6227.2.S1_x_at1/111+2002954..2004056hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53345.1.S1_at--430--8371Chr01:1974758..1974782 (25 bp)
GGCGACGTCAACCTGGCCAACATGG
LOC_Os01g04450
Os.53345.1.S1_at--554--871Chr01:1974737..1974761 (25 bp)
ATGGCCGTGCACATGATCCAGAGCT
LOC_Os01g04450
Os.53345.1.S1_at--1131--8811Chr01:1974574..1974598 (25 bp)
TGTTGGACGCGCTGAGAGAAGCTCA
LOC_Os01g04450
Os.53345.1.S1_at--546--1451Chr01:1974558..1974582 (25 bp)
AGAAGCTCAGCGGATGGACAAGGTA
LOC_Os01g04450
Os.53345.1.S1_at--1110--1931Chr01:1974490..1974514 (25 bp)
ACGGCTCTCCGGACTGCGTCATGTA
LOC_Os01g04450
Os.53345.1.S1_at--269--7111Chr01:1974473..1974497 (25 bp)
GTCATGTACCAGTGGATTAGCCCAT
LOC_Os01g04450
Os.53345.1.S1_at--1141--3351Chr01:1974447..1974471 (25 bp)
CACCACTTCCAATAACAGCAGCTGA
LOC_Os01g04450
Os.53345.1.S1_at--73--8491Chr01:1974396..1974420 (25 bp)
TGGCTACTGACTGCAGACACCGTAA
LOC_Os01g04450
Os.53345.1.S1_at--284--6151Chr01:1974303..1974327 (25 bp)
GAGGTTTATGTGTCTTTGGCTGTAA
LOC_Os01g04450
Os.53345.1.S1_at--784--8811Chr01:1974277..1974301 (25 bp)
TGAGTTAACTTGTTGGCCAGTGGTT
LOC_Os01g04450
Os.53345.1.S1_at--1130--6851Chr01:1974255..1974279 (25 bp)
GTTTGGCTACTTTGGCACATTCAGA
LOC_Os01g04450
Target Sequence 
GGCGACGTCAACCTGGCCAACATGGCCGTGCACATGATCCAGAGCTACGAGATGGAGCAGCTGGTGGACCCGCAGCTCGG
GTACGCGTCGGACGGCGAGACGAGGAGGACGGTCGATCTCGTCGCCGAGGTGGCGTTCCGGTGCTTGCAGCCGGAGCAGG
ACGTGAGGCCGCCGATCGGTGAGGTGTTGGACGCGCTGAGAGAAGCTCAGCGGATGGACAAGGTAGGCTACGTCAAGGAC
GACGCCGGGCTGGTCAAGAAGAGCCGAGACGGCTCTCCGGACTGCGTCATGTACCAGTGGATTAGCCCATCCACCACTTC
CAATAACAGCAGCTGAGACTTGACAAGATGTTCAGAAAATACTGGCTACTGACTGCAGACACCGTAAATATTCAGAGTTG
TGTGCTATTGTTTGTCAGAGAAAGAGAGGTTTCCCATGAAAAGAAAAAAGACATAGAGGTTTATGTGTCTTTGGCTGTAA
CTGAGTTAACTTGTTGGCCAGTGGTTTGGCTACTTTGGCACATTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53345.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis