Browse Element(s) Details


Os.4775.1.S1_at

Description gb:AK121025.1
DB_XREF= gi:37990648
TID=Os.4775.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.4775 (NCBI UniGene Cluster)
UG_TITLE=O.sativa mRNA for 16.9 kD low molecular weight heat shock protein
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050A14, full insert sequence.
FL= gb:AK121025.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0438011/1116.9 kDa class I heat shock protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04330Os.36767.1.S1_at11/111+1927818..1928706EF hand family protein, expressed
LOC_Os01g04340Os.36328.1.S1_at11/111+1930919..193172616.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04350Os.14405.1.S1_at11/111+1937814..1938713Hsp20/alpha crystallin family protein, expressed
LOC_Os01g04360OsAffx.10905.3.S1_at11/111+1941063..194181316.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04370Os.4775.2.S1_at11/111+1945553..194638916.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04380Os.4775.1.S1_at11/111+1948732..194948516.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04380Os.57467.1.S1_x_at1/111+1948732..194948516.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04390Os.51285.1.S1_at11/111+1951950..1952727expressed protein
LOC_Os01g04409OsAffx.23111.2.S1_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04409OsAffx.23111.1.S1_s_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04409Os.14959.1.S1_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04430OsAffx.10906.3.A1_at11/111+1965125..1967340hypothetical protein
LOC_Os01g04430OsAffx.10906.3.A1_x_at11/111+1965125..1967340hypothetical protein
LOC_Os01g04440OsAffx.23109.1.S1_at10/111+1970501..1973993hypothetical protein
LOC_Os01g04440OsAffx.10096.1.S1_x_at1/111+1970501..1973993hypothetical protein
LOC_Os01g04450Os.53345.1.S1_at11/111+1974225..1979286Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0009408biological_processresponse to heat
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4775.1.S1_at--867--6031Chr01:1949287..1949311 (25 bp)
GAGATCTCTGGCTAAAATGGTGAAA
LOC_Os01g04380
Os.4775.1.S1_at--1097--7811Chr01:1949327..1949351 (25 bp)
GGTCAAGGCGTGTCATGCATGTTCA
LOC_Os01g04380
Os.4775.1.S1_at--1063--4651Chr01:1949334..1949358 (25 bp)
GCGTGTCATGCATGTTCACTCTGAA
LOC_Os01g04380
Os.4775.1.S1_at--745--631Chr01:1949341..1949365 (25 bp)
ATGCATGTTCACTCTGAACTGTTTG
LOC_Os01g04380
Os.4775.1.S1_at--270--6251Chr01:1949385..1949409 (25 bp)
GATGGTTTTTACTAGTCCTATGAAC
LOC_Os01g04380
Os.4775.1.S1_at--799--2031Chr01:1949395..1949419 (25 bp)
ACTAGTCCTATGAACTGTGTATTCT
LOC_Os01g04380
Os.4775.1.S1_at--322--5471Chr01:1949406..1949430 (25 bp)
GAACTGTGTATTCTTTTGTACTCTG
LOC_Os01g04380
Os.4775.1.S1_at--203--10411Chr01:1949419..1949443 (25 bp)
TTTTGTACTCTGTTGTGAGCGCGTT
LOC_Os01g04380
Os.4775.1.S1_at--53--9913Chr03:9023522..9023541 (20 bp)
TACTCTGTTGTGAGCGCGTTTGCAC
NONE
Os.4775.1.S1_at--849--10831Chr01:1949431..1949455 (25 bp)
TTGTGAGCGCGTTTGCACGAAGCAA
LOC_Os01g04380
Os.4775.1.S1_at--947--5871Chr01:1949435..1949459 (25 bp)
GAGCGCGTTTGCACGAAGCAATAAA
LOC_Os01g04380
Target Sequence 
GAGATCTCTGGCTAAAATGGTGAAAACGGGAGTTTGTCAAGGTCAAGGCGTGTCATGCATGTTCACTCTGAACTGTTTGC
GGTGTTTCACTCGGGTTTGATGGTTTTTACTAGTCCTATGAACTGTGTATTCTTTTGTACTCTGTTGTGAGCGCGTTTGC
ACGAAGCAATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4775.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis