Browse Element(s) Details


OsAffx.10096.1.S1_x_at

Description gb:NM_187268.1
DB_XREF= gi:34901621
GEN=P0640E12.2
TID=OsAffx.10096.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0640E12.2 (P0640E12.2), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g097202/11hypothetical protein
LOC_Os02g394702/11Cyclin, N-terminal domain containing protein
LOC_Os07g153602/11hypothetical protein
LOC_Os11g044701/11hypothetical protein
LOC_Os01g044401/11hypothetical protein
LOC_Os08g247701/11Legume lectins beta domain containing protein, expressed
LOC_Os03g414381/11Protein Z, putative, expressed
LOC_Os10g184301/11agmatine coumaroyltransferase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g09680OsAffx.7538.1.S1_at11/1112+5107209..5110970hypothetical protein
LOC_Os12g09690OsAffx.7539.1.S1_at10/1112+5111140..5111941hypothetical protein
LOC_Os12g09690OsAffx.13846.1.S1_at1/1112+5111140..5111941hypothetical protein
LOC_Os12g09700Os.18585.1.S1_at11/1112+5115381..5117084jasmonate-induced protein, putative, expressed
LOC_Os12g09710OsAffx.19580.1.S1_at11/1112+5124188..5128660NB-ARC domain containing protein
LOC_Os12g09720OsAffx.10096.1.S1_x_at2/1112+5131800..5134232hypothetical protein
LOC_Os12g09739Os.52199.1.S1_at11/1112+5136625..5148413NB-ARC domain containing protein, expressed
LOC_Os12g09739OsAffx.19581.1.S1_at7/1112+5136625..5148413NB-ARC domain containing protein, expressed
LOC_Os12g09739OsAffx.14952.1.S1_at1/1112+5136625..5148413NB-ARC domain containing protein, expressed
LOC_Os12g09760NANA12+5154379..5157155retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0004867molecular_functionserine-type endopeptidase inhibitor activity
GO:0015071molecular_functionprotein phosphatase type 2C activity
GO:0016301molecular_functionkinase activity
GO:0016538molecular_functioncyclin-dependent protein kinase regulator activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10096.1.S1_x_at--146--2651Chr07:17249500..17249524 (25 bp)
AAGCCTCTGGCAATGGGCCTCCGCT
NONE
OsAffx.10096.1.S1_x_at--800--9291Chr07:17249519..17249543 (25 bp)
TCCGCTTCGCTACAGCAGAAGCTGG
NONE
OsAffx.10096.1.S1_x_at--39--3652Chr11:7725785..7725983 (25 bp)
CTTCGCTACAGCAGAAGCTGGCCTT
NONE
OsAffx.10096.1.S1_x_at--590--53980Chr12:13202502..13202526 (25 bp)
GAAGCTGGCCTTTATTAAGTGCAAA
NONE
OsAffx.10096.1.S1_x_at--1131--311137Chr12:477118..477139 (22 bp)
AATTTGGATCACAACTCAACAGAGG
NONE
OsAffx.10096.1.S1_x_at--633--9691Chr07:17249571..17249595 (25 bp)
TCACAACTCAACAGAGGCAGCGTCC
NONE
OsAffx.10096.1.S1_x_at--323--931Chr07:17249585..17249609 (25 bp)
AGGCAGCGTCCGTGGCGACCGCAAC
NONE
OsAffx.10096.1.S1_x_at--826--991Chr07:17249623..17249647 (25 bp)
AGGATGCCGGCGAGCAAGGCGGAGA
NONE
OsAffx.10096.1.S1_x_at--673--6211Chr07:17249707..17249731 (25 bp)
GAGGCCACCGCGTTGGGCTTCGACC
NONE
OsAffx.10096.1.S1_x_at--716--4031Chr07:17249717..17249741 (25 bp)
CGTTGGGCTTCGACCACCGGTGCGA
NONE
OsAffx.10096.1.S1_x_at--555--1711Chr07:17249729..17249753 (25 bp)
ACCACCGGTGCGACGCGATGTCCAG
NONE
Target Sequence 
AAGCCTCTGGCAATGGGCCTCCGCTTCGCTACAGCAGAAGCTGGCCTTTATTAAGTGCAAATAAATTTGGATCACAACTC
AACAGAGGCAGCGTCCGTGGCGACCGCAACGGCAGCGGCGAGGAGGATGCCGGCGAGCAAGGCGGAGAGGAGGGCGGTTG
TGGTGGGTGCGGTGGCGGCGGCGAGGAGGAGCGGGGAGAGGAGCGCCGAGGCCACCGCGTTGGGCTTCGACCACCGGTGC
GACGCGATGTCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10096.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis