Browse Element(s) Details

Os.57467.1.S1_x_at

Description

gb:D42590
DB_XREF= gi:3107887
DB_XREF=D42590
CLONE=T116
TID=Os.57467.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57467 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for heat shock protein 17.6 (T116 gene), partial sequence
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g16020	6/11	17.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16030	5/11	17.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15960	5/11	17.4 kDa class I heat shock protein, putative, expressed
LOC_Os01g04380	1/11	16.9 kDa class I heat shock protein, putative, expressed
LOC_Os03g16040	1/11	17.4 kDa class I heat shock protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g15970	OsAffx.10071.1.S1_at	11/11	3	+	8786381..8788265	transposon protein, putative, Mariner sub-class
LOC_Os03g15980	OsAffx.31659.1.S1_s_at	11/11	3	+	8788487..8788932	hypothetical protein
LOC_Os03g15980	OsAffx.31659.2.S1_at	8/11	3	+	8788487..8788932	hypothetical protein
LOC_Os03g15990	OsAffx.25104.1.S1_at	11/11	3	+	8794075..8796397	hydroxyproline-rich glycoprotein family protein, putative
LOC_Os03g16000	Os.34102.1.S1_a_at	10/11	3	+	8798197..8803386	Variant SH3 domain containing protein, expressed
LOC_Os03g16010	Os.10798.1.S1_at	11/11	3	+	8806805..8812628	protein kinase, putative, expressed
LOC_Os03g16010	Os.26733.3.S1_x_at	3/11	3	+	8806805..8812628	protein kinase, putative, expressed
LOC_Os03g16020	Os.22731.1.S1_at	11/11	3	+	8812766..8813529	17.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16020	Os.57467.1.S1_x_at	6/11	3	+	8812766..8813529	17.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16020	Os.37773.1.S1_x_at	4/11	3	+	8812766..8813529	17.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16030	Os.37773.1.S1_x_at	11/11	3	+	8813884..8814654	17.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16030	Os.37773.1.S1_at	11/11	3	+	8813884..8814654	17.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16030	Os.57467.1.S1_x_at	5/11	3	+	8813884..8814654	17.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16040	Os.22730.1.S1_at	11/11	3	+	8816812..8817676	17.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16040	Os.37773.1.S1_x_at	2/11	3	+	8816812..8817676	17.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16040	Os.57467.1.S1_x_at	1/11	3	+	8816812..8817676	17.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16050	Os.11756.1.S1_at	11/11	3	+	8820321..8822122	Fructose-1,6-bisphosphatase, chloroplast precursor, putative, expressed
LOC_Os03g16050	Os.11756.1.S1_s_at	11/11	3	+	8820321..8822122	Fructose-1,6-bisphosphatase, chloroplast precursor, putative, expressed
LOC_Os03g16060	Os.49668.1.S1_at	11/11	3	+	8830385..8833479	lipase, putative, expressed
LOC_Os03g16070	Os.9617.1.S1_at	6/11	3	+	8833684..8838058	expressed protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006979	biological_process	response to oxidative stress
GO:0009408	biological_process	response to heat

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.57467.1.S1_x_at--800--71	3	Chr03:8814005..8814028 (24 bp)	ATGATCCGCCGCAGCAACGTGTTCG	LOC_Os03g16030
Os.57467.1.S1_x_at--545--885	3	Chr03:8814005..8814029 (25 bp)	TGATCCGCCGCAGCAACGTGTTCGA	LOC_Os03g16030
Os.57467.1.S1_x_at--894--635	3	Chr03:8814006..8814030 (25 bp)	GATCCGCCGCAGCAACGTGTTCGAC	LOC_Os03g16030
Os.57467.1.S1_x_at--821--505	4	Chr03:8814014..8814038 (25 bp)	GCAGCAACGTGTTCGACCCCTTCTC	LOC_Os03g16030
Os.57467.1.S1_x_at--485--291	1	NONE	AAGGAGACGCCCGAGGCACCGTGTT	NONE
Os.57467.1.S1_x_at--870--805	1	NONE	GGAGACGCCCGAGGCACCGTGTTCA	NONE
Os.57467.1.S1_x_at--982--137	1	NONE	AGACGCCCGAGGCACCGTGTTCAAG	NONE
Os.57467.1.S1_x_at--1129--579	1	NONE	GACGCCCGAGGCACCGTGTTCAAGG	NONE
Os.57467.1.S1_x_at--575--423	1	NONE	CCGAGGCACCGTGTTCAAGGCGGAC	NONE
Os.57467.1.S1_x_at--527--335	4	Chr03:8814192..8814213 (22 bp)	CACCGTGTTCAAGGCGGACGTGCCG	LOC_Os03g16030
Os.57467.1.S1_x_at--726--855	1	Chr03:8813190..8813210 (21 bp)	TGGAGGTTGAGGACGGCAACGCTCC	LOC_Os03g16020

Target Sequence

ATGATCCGCCGCAGCAACGTGTTCGACCCCTTCTCCCTCNNCCTCTGGGACCCCTTCGACGGCTTCCCCTTCGGCTCCGG
CAGCGGCAGCTCTTCCCTCGNNCCAACTCCGACGCGGCGCCTTCGGCGGANTCCNGACTGGAAGGAGACGCCCGAGGCAC
CGTGTTCAAGGCGGACGTGCCGNGGCTGAAGAAGGAGGAGGTCAAGGTGGAGGTTGAGGACGGCAACGCTCC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis