Browse Element(s) Details


Os.49668.1.S1_at

Description gb:AK120179.1
DB_XREF= gi:37989802
TID=Os.49668.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49668 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-038-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013033K02, full insert sequence.
FL= gb:AK120179.1 gb:AK061753.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1606011/11lipase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16010Os.10798.1.S1_at11/113+8806805..8812628protein kinase, putative, expressed
LOC_Os03g16010Os.26733.3.S1_x_at3/113+8806805..8812628protein kinase, putative, expressed
LOC_Os03g16020Os.22731.1.S1_at11/113+8812766..881352917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16020Os.57467.1.S1_x_at6/113+8812766..881352917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16020Os.37773.1.S1_x_at4/113+8812766..881352917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16030Os.37773.1.S1_x_at11/113+8813884..881465417.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16030Os.37773.1.S1_at11/113+8813884..881465417.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16030Os.57467.1.S1_x_at5/113+8813884..881465417.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16040Os.22730.1.S1_at11/113+8816812..881767617.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16040Os.37773.1.S1_x_at2/113+8816812..881767617.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16040Os.57467.1.S1_x_at1/113+8816812..881767617.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16050Os.11756.1.S1_at11/113+8820321..8822122Fructose-1,6-bisphosphatase, chloroplast precursor, putative, expressed
LOC_Os03g16050Os.11756.1.S1_s_at11/113+8820321..8822122Fructose-1,6-bisphosphatase, chloroplast precursor, putative, expressed
LOC_Os03g16060Os.49668.1.S1_at11/113+8830385..8833479lipase, putative, expressed
LOC_Os03g16070Os.9617.1.S1_at6/113+8833684..8838058expressed protein
LOC_Os03g16080Os.32299.1.S1_at11/113+8845017..8848272Mitochondrial carrier protein, expressed
LOC_Os03g16090Os.14601.1.S1_at11/113+8849242..8854454LIM domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49668.1.S1_at--174--7091Chr03:8833140..8833164 (25 bp)
GTCAACATGGACGATTCCGACTCGC
LOC_Os03g16060
Os.49668.1.S1_at--691--9331Chr03:8833161..8833185 (25 bp)
TCGCTCATTGCGAGGTCATGACATA
LOC_Os03g16060
Os.49668.1.S1_at--1088--9611Chr03:8833176..8833200 (25 bp)
TCATGACATACATAGCGGGCAGTGT
LOC_Os03g16060
Os.49668.1.S1_at--548--8271Chr03:8833193..8833217 (25 bp)
GGCAGTGTTACACCGTATGAGTCGT
LOC_Os03g16060
Os.49668.1.S1_at--353--8891Chr03:8833210..8833234 (25 bp)
TGAGTCGTGTGTGTTTACGTGCCTT
LOC_Os03g16060
Os.49668.1.S1_at--418--8771Chr03:8833221..8833245 (25 bp)
TGTTTACGTGCCTTATCGCCATAAG
LOC_Os03g16060
Os.49668.1.S1_at--12--6551Chr03:8833307..8833331 (25 bp)
GATTTTACCTCAGATAGATGCTCAG
LOC_Os03g16060
Os.49668.1.S1_at--64--10811Chr03:8833382..8833406 (25 bp)
TTGTAATTTGCTTATGACGCCCCTT
LOC_Os03g16060
Os.49668.1.S1_at--190--5811Chr03:8833397..8833421 (25 bp)
GACGCCCCTTCACTGTAAAGTTGAA
LOC_Os03g16060
Os.49668.1.S1_at--964--1211Chr03:8833431..8833455 (25 bp)
AGTTCTGCTAGTCACACACTGGGCT
LOC_Os03g16060
Os.49668.1.S1_at--105--7591Chr03:8833451..8833475 (25 bp)
GGGCTTCAGCATGTTTTCCACTTCT
LOC_Os03g16060
Target Sequence 
GTCAACATGGACGATTCCGACTCGCTCATTGCGAGGTCATGACATACATAGCGGGCAGTGTTACACCGTATGAGTCGTGT
GTGTTTACGTGCCTTATCGCCATAAGTTACTTATGGTAAGATCTGTAAATATATTGCAGGTTGAGATATTTTTGTTTTCG
GGGAGTGGATTTTACCTCAGATAGATGCTCAGGGGTGAGTAGTAAAGCGAGTAATCCGGGATAGATGTTCTAATTAGCGG
TATTGTAATTTGCTTATGACGCCCCTTCACTGTAAAGTTGAAAGAATCTCNAGTTCTGCTAGTCACACACTGGGCTTCAG
CATGTTTTCCACTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49668.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis