Browse Element(s) Details


Os.14601.1.S1_at

Description gb:AK069586.1
DB_XREF= gi:32979610
TID=Os.14601.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14601 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023020C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023020C05, full insert sequence.
FL= gb:AK069586.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1609011/11LIM domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16060Os.49668.1.S1_at11/113+8830385..8833479lipase, putative, expressed
LOC_Os03g16070Os.9617.1.S1_at6/113+8833684..8838058expressed protein
LOC_Os03g16080Os.32299.1.S1_at11/113+8845017..8848272Mitochondrial carrier protein, expressed
LOC_Os03g16090Os.14601.1.S1_at11/113+8849242..8854454LIM domain-containing protein, putative, expressed
LOC_Os03g16100OsAffx.3251.1.S1_at11/113+8861912..8862169hypothetical protein
LOC_Os03g16110Os.12164.2.S1_x_at11/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16110Os.12164.1.S1_at11/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16110OsAffx.24898.1.S1_at1/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16120Os.15434.1.S1_at11/113+8871212..8874611expressed protein
LOC_Os03g16120Os.15434.2.S1_x_at10/113+8871212..8874611expressed protein
LOC_Os03g16120Os.15434.2.S1_at8/113+8871212..8874611expressed protein
LOC_Os03g16130Os.50427.1.S1_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16130Os.21451.1.S1_a_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16130Os.21451.3.S1_x_at11/113+8875256..8881032Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14601.1.S1_at--124--1031Chr03:8849804..8849828 (25 bp)
AGGTATATGCCAGGTCATGTCTTAC
LOC_Os03g16090
Os.14601.1.S1_at--566--3491Chr03:8849789..8849813 (25 bp)
CATGTCTTACCTGTGGCTGGAGTCA
LOC_Os03g16090
Os.14601.1.S1_at--434--571Chr03:8849761..8849785 (25 bp)
ATCCTTCCATCCACTTCAAGATATG
LOC_Os03g16090
Os.14601.1.S1_at--401--2891Chr03:8849674..8849698 (25 bp)
AAGGGTGGGATCTCTCACACCGAGA
LOC_Os03g16090
Os.14601.1.S1_at--135--111Chr03:8849636..8849660 (25 bp)
ATTCTTCCTGCATCAGATCGCCAAT
LOC_Os03g16090
Os.14601.1.S1_at--1012--8951Chr03:8849612..8849636 (25 bp)
TGACACATCATCAGCATACGGCGAT
LOC_Os03g16090
Os.14601.1.S1_at--647--6251Chr03:8849590..8849614 (25 bp)
GATGGTTTCAGAGCTGCCTATGCAG
LOC_Os03g16090
Os.14601.1.S1_at--110--4731Chr03:8849566..8849590 (25 bp)
GCTGTGAACAAGTATGGCCTTCGCC
LOC_Os03g16090
Os.14601.1.S1_at--66--9811Chr03:8849520..8849544 (25 bp)
TAACCGGAGGCTTTCCTGTGTAACA
LOC_Os03g16090
Os.14601.1.S1_at--916--3871Chr03:8849485..8849509 (25 bp)
CTGTCTATCAGTCTATGTCCATACT
LOC_Os03g16090
Os.14601.1.S1_at--98--8751Chr03:8849264..8849288 (25 bp)
TGTAATGCACAGTATGGCCCATGAT
LOC_Os03g16090
Target Sequence 
AGGTATATGCCAGGTCATGTCTTACCTGTGGCTGGAGTCAGAGATCCTTCCATCCACTTCAAGATATGGACAGGCTTCAA
CANTCTTACGCNTCATCTTCGTCGTCCTCCTGTCGACCACCACCGTCCAAGAAGGGTGGGATCTCTCACACCGAGAAGAA
GCTTGGAGAATTCTTCCTGCATCAGATCGCCAATGACACATCATCAGCATACGGCGATGGTTTCAGAGCTGCCTATGCAG
CTGTGAACAAGTATGGCCTTCGCCNATCACTGAACCATATACGGCTAACCGGAGGCTTTCCTGTGTAACACAAGAAAGCN
CTGTCTATCAGTCTATGTCCATACTGGATGCGGGTATACAGATATCATACACACATACATATGGAGATCATATGGGTTAT
GGTAATGGAGTAAGATTTCGGATTTGGGTGACCTTGAGTTTTCAGAGAGGTCCTATCAGAGTAAATCAGTTAAGGAACTG
CATTTGCTCGAATTAACANGGAGCTGAGGTTGCAATCTAATAAGGTGACTAAGAAACACTAATGTAATGCACAGTATGGC
CCATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14601.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis