Browse Element(s) Details


Os.15434.1.S1_at

Description gb:AK065357.1
DB_XREF= gi:32975375
TID=Os.15434.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15434 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OJ1364E02.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013022G07, full insert sequence.
FL= gb:AK065357.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1612011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16080Os.32299.1.S1_at11/113+8845017..8848272Mitochondrial carrier protein, expressed
LOC_Os03g16090Os.14601.1.S1_at11/113+8849242..8854454LIM domain-containing protein, putative, expressed
LOC_Os03g16100OsAffx.3251.1.S1_at11/113+8861912..8862169hypothetical protein
LOC_Os03g16110Os.12164.2.S1_x_at11/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16110Os.12164.1.S1_at11/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16110OsAffx.24898.1.S1_at1/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16120Os.15434.1.S1_at11/113+8871212..8874611expressed protein
LOC_Os03g16120Os.15434.2.S1_x_at10/113+8871212..8874611expressed protein
LOC_Os03g16120Os.15434.2.S1_at8/113+8871212..8874611expressed protein
LOC_Os03g16130Os.50427.1.S1_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16130Os.21451.1.S1_a_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16130Os.21451.3.S1_x_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16140Os.7263.1.S1_at11/113+8881803..8885407digalactosyldiacylglycerol synthase 2, putative, expressed
LOC_Os03g16150Os.56198.1.S1_at11/113+8888314..8891909mannose-1-phosphate guanyltransferase, putative, expressed
LOC_Os03g16150Os.43951.1.S1_at10/113+8888314..8891909mannose-1-phosphate guanyltransferase, putative, expressed
LOC_Os03g16160OsAffx.25105.1.S1_at11/113+8895670..8896206hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15434.1.S1_at--704--9351Chr03:8871515..8871626 (25 bp)
TCGCACGCCTATATAGACCTGTGTT
LOC_Os03g16120
Os.15434.1.S1_at--680--291Chr03:8871503..8871527 (25 bp)
ATAGACCTGTGTTAAGAGGCATAGA
LOC_Os03g16120
Os.15434.1.S1_at--1162--6191Chr03:8871488..8871512 (25 bp)
GAGGCATAGAGAGCAACTTAATGAA
LOC_Os03g16120
Os.15434.1.S1_at--753--5531Chr03:8871453..8871477 (25 bp)
GAAACATATGCAACGATCCAGTAAT
LOC_Os03g16120
Os.15434.1.S1_at--486--9171Chr03:8871437..8871461 (25 bp)
TCCAGTAATTTTGGATGACCGATTA
LOC_Os03g16120
Os.15434.1.S1_at--1058--3651Chr03:8871403..8871427 (25 bp)
CTTACCTGCCTACACACAAAAGGCA
LOC_Os03g16120
Os.15434.1.S1_at--323--2311Chr03:8871385..8871409 (25 bp)
AAAGGCAGAGCTTACAGCAAGTAAC
LOC_Os03g16120
Os.15434.1.S1_at--1082--5171Chr03:8871369..8871393 (25 bp)
GCAAGTAACGATCATTTGTAGAGTT
LOC_Os03g16120
Os.15434.1.S1_at--1049--6991Chr03:8871319..8871343 (25 bp)
GTACGTGTACATTCGGTTCACTGTT
LOC_Os03g16120
Os.15434.1.S1_at--964--2071Chr03:8871311..8871335 (25 bp)
ACATTCGGTTCACTGTTGTATTATA
LOC_Os03g16120
Os.15434.1.S1_at--990--2411Chr03:8871269..8871293 (25 bp)
AACAAATGAACGAGTACACCCGCCA
LOC_Os03g16120
Target Sequence 
TCGCACGCCTATATAGACCTGTGTTAAGAGGCATAGAGAGCAACTTAATGAAAATGAAACAAGAAACATATGCAACGATC
CAGTAATTTTGGATGACCGATTATTTTCCCCCCTTACCTGCCTACACACAAAAGGCAGAGCTTACAGCAAGTAACGATCA
TTTGTAGAGTTACAATCAACTATAGTCAACATTGTTGTACGTGTACATTCGGTTCACTGTTGTATTATATTGGAAATGGG
GGCAGTAACAAATGAACGAGTACACCCGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15434.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis