Browse Element(s) Details


Os.21451.1.S1_a_at

Description gb:AK069243.1
DB_XREF= gi:32979267
TID=Os.21451.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21451 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative S_TKc, SerineThreonine protein kinases, catalytic domain (OJA1364E02.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023010P21, full insert sequence.
FL= gb:AK099658.1 gb:AK069243.1 gb:AK101486.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1613011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16090Os.14601.1.S1_at11/113+8849242..8854454LIM domain-containing protein, putative, expressed
LOC_Os03g16100OsAffx.3251.1.S1_at11/113+8861912..8862169hypothetical protein
LOC_Os03g16110Os.12164.2.S1_x_at11/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16110Os.12164.1.S1_at11/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16110OsAffx.24898.1.S1_at1/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16120Os.15434.1.S1_at11/113+8871212..8874611expressed protein
LOC_Os03g16120Os.15434.2.S1_x_at10/113+8871212..8874611expressed protein
LOC_Os03g16120Os.15434.2.S1_at8/113+8871212..8874611expressed protein
LOC_Os03g16130Os.50427.1.S1_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16130Os.21451.1.S1_a_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16130Os.21451.3.S1_x_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16140Os.7263.1.S1_at11/113+8881803..8885407digalactosyldiacylglycerol synthase 2, putative, expressed
LOC_Os03g16150Os.56198.1.S1_at11/113+8888314..8891909mannose-1-phosphate guanyltransferase, putative, expressed
LOC_Os03g16150Os.43951.1.S1_at10/113+8888314..8891909mannose-1-phosphate guanyltransferase, putative, expressed
LOC_Os03g16160OsAffx.25105.1.S1_at11/113+8895670..8896206hypothetical protein
LOC_Os03g16170Os.35013.1.S1_at11/113+8900444..8902490Protein phosphatase 2C, putative, expressed
LOC_Os03g16170Os.27906.1.S1_a_at1/113+8900444..8902490Protein phosphatase 2C, putative, expressed
LOC_Os03g16180NANA3+8904205..8905896retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21451.1.S1_a_at--122--8931Chr03:8875608..8875632 (25 bp)
TGACCGCTCACCTGTACAATATTCT
LOC_Os03g16130
Os.21451.1.S1_a_at--1069--2231Chr03:8875593..8875617 (25 bp)
ACAATATTCTTTCATCCTGTACATA
LOC_Os03g16130
Os.21451.1.S1_a_at--281--4271Chr03:8875578..8875602 (25 bp)
CCTGTACATATATTCGTTGGCCCAA
LOC_Os03g16130
Os.21451.1.S1_a_at--524--9391Chr03:8875565..8875589 (25 bp)
TCGTTGGCCCAAACGAGGGCGTGTA
LOC_Os03g16130
Os.21451.1.S1_a_at--232--7131Chr03:8875534..8875558 (25 bp)
GTCATGTCTGAGAACGTGCTCCGAT
LOC_Os03g16130
Os.21451.1.S1_a_at--1010--5511Chr03:8875495..8875519 (25 bp)
GAAAAATCCAGTGTAACTTGCCCAA
LOC_Os03g16130
Os.21451.1.S1_a_at--821--2511Chr03:8875481..8875505 (25 bp)
AACTTGCCCAAACTGCCTACTGTAA
LOC_Os03g16130
Os.21451.1.S1_a_at--522--3711Chr03:8875465..8875489 (25 bp)
CTACTGTAACGTGAGCTCGGTGTGC
LOC_Os03g16130
Os.21451.1.S1_a_at--359--1591Chr03:8875452..8875476 (25 bp)
AGCTCGGTGTGCTTGCATGGTACGC
LOC_Os03g16130
Os.21451.1.S1_a_at--353--4931Chr03:8875442..8875466 (25 bp)
GCTTGCATGGTACGCCTGATTATCA
LOC_Os03g16130
Os.21451.1.S1_a_at--230--10831Chr03:8875377..8875401 (25 bp)
TTGTGGACATGTAAAGCAGACTGCT
LOC_Os03g16130
Target Sequence 
TGACCGCTCACCTGTACAATATTCTTTCATCCTGTACATATATTCGTTGGCCCAAACGAGGGCGTGTAAGATATGTCATG
TCTGAGAACGTGCTCCGATTAGGGAGAAGTAGCGAAAAATCCAGTGTAACTTGCCCAAACTGCCTACTGTAACGTGAGCT
CGGTGTGCTTGCATGGTACGCCTGATTATCAGGCAGCTCAGGNTGGCAGCTGAAGGCCCGACCANGGTCGTTTGTGGACA
TGTAAAGCAGACTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21451.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis