Browse Element(s) Details


Os.21451.3.S1_x_at

Description gb:NM_187478.1
DB_XREF= gi:34902041
GEN=OJA1364E02.9
TID=Os.21451.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.21451 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative S_TKc, SerineThreonine protein kinases, catalytic domain (OJA1364E02.9), mRNA.
PROD=putative S_TKc, SerineThreonine proteinkinases, catalytic domain
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1613011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16090Os.14601.1.S1_at11/113+8849242..8854454LIM domain-containing protein, putative, expressed
LOC_Os03g16100OsAffx.3251.1.S1_at11/113+8861912..8862169hypothetical protein
LOC_Os03g16110Os.12164.2.S1_x_at11/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16110Os.12164.1.S1_at11/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16110OsAffx.24898.1.S1_at1/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16120Os.15434.1.S1_at11/113+8871212..8874611expressed protein
LOC_Os03g16120Os.15434.2.S1_x_at10/113+8871212..8874611expressed protein
LOC_Os03g16120Os.15434.2.S1_at8/113+8871212..8874611expressed protein
LOC_Os03g16130Os.50427.1.S1_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16130Os.21451.1.S1_a_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16130Os.21451.3.S1_x_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16140Os.7263.1.S1_at11/113+8881803..8885407digalactosyldiacylglycerol synthase 2, putative, expressed
LOC_Os03g16150Os.56198.1.S1_at11/113+8888314..8891909mannose-1-phosphate guanyltransferase, putative, expressed
LOC_Os03g16150Os.43951.1.S1_at10/113+8888314..8891909mannose-1-phosphate guanyltransferase, putative, expressed
LOC_Os03g16160OsAffx.25105.1.S1_at11/113+8895670..8896206hypothetical protein
LOC_Os03g16170Os.35013.1.S1_at11/113+8900444..8902490Protein phosphatase 2C, putative, expressed
LOC_Os03g16170Os.27906.1.S1_a_at1/113+8900444..8902490Protein phosphatase 2C, putative, expressed
LOC_Os03g16180NANA3+8904205..8905896retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21451.3.S1_x_at--371--8071Chr03:8876629..8876653 (25 bp)
GGAGCAGTATGCGTCTACCATAGCA
LOC_Os03g16130
Os.21451.3.S1_x_at--683--7671Chr03:8876314..8876338 (25 bp)
GGGATTCTCGATTCAGCTAGTTGTT
LOC_Os03g16130
Os.21451.3.S1_x_at--692--9551Chr03:8876253..8876277 (25 bp)
TCTTATGCATCTTCTGCCACAAGAG
LOC_Os03g16130
Os.21451.3.S1_x_at--623--6011Chr03:8876231..8876255 (25 bp)
GAGAGAATCCTTCCCATGATGTCAC
LOC_Os03g16130
Os.21451.3.S1_x_at--46--1051Chr03:8876201..8876225 (25 bp)
AGGGTTTTGGCTCAAATGCTCCCCA
LOC_Os03g16130
Os.21451.3.S1_x_at--528--211Chr03:8876177..8876201 (25 bp)
ATTTGCTTGCAAACTCTCAACTGTT
LOC_Os03g16130
Os.21451.3.S1_x_at--223--3071Chr03:8875952..8875976 (25 bp)
AATCATATTTCAGACCGCGCTTAAC
LOC_Os03g16130
Os.21451.3.S1_x_at--1148--5791Chr03:8875940..8875964 (25 bp)
GACCGCGCTTAACCTGGGAAGACAT
LOC_Os03g16130
Os.21451.3.S1_x_at--577--471Chr03:8875783..8875807 (25 bp)
ATCTGCCATGGTGCTGTACTCGAAG
LOC_Os03g16130
Os.21451.3.S1_x_at--115--5311Chr03:8875762..8875786 (25 bp)
GAAGGCAGTATCCATGCTGCGCTTT
LOC_Os03g16130
Os.21451.3.S1_x_at--1089--4451Chr03:8875670..8875694 (25 bp)
GCCTGCGCACATACATTGAAGCCGT
LOC_Os03g16130
Target Sequence 
GGAGCAGTATGCGTCTACCATAGCAGAATTGGTGAAAGAAAAGATTAAAGATGCCAAGCACTTAGAGGGATTCTCGATTC
AGCTAGTTGTTCTTGCAACCTGGAAGCAAGCAATTTACATCTGCACTTCTTATGCATCTTCTGCCACAAGAGAGAATCCT
TCCCATGATGTCACCGCGAAGGGTTTTGGCTCAAATGCTCCCCATTTGCTTGCAAACTCTCAACTGTTATATGATACATG
CATGGAGATAGAGAGTCAGTTTTTGGTTCAAATGGAATATGCTGAAGAACTTGCCAACACTATAGGACAGACAGTTGATG
CTACAGAAATGCCAGATGCGATAGAAATCATATTTCAGACCGCGCTTAACCTGGGAAGACATGGTGGTGTTGATGAGATG
ATGGGGAAATCAGCATCTGCCATGGTGCTGTACTCGAAGGCAGTATCCATGCTGCGCTTTCTCCTGACTGAGGCACCGTC
ACTCGCCCTGAACCCCGCTCTGTCCCTAACAAGAGATGATCGACGCCGCCTGCGCACATACATTGAAGCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21451.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis