Browse Element(s) Details


Os.12164.1.S1_at

Description gb:AK063856.1
DB_XREF= gi:32973874
TID=Os.12164.1
CNT=26
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12164 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative SERINETHREONINE PROTEIN PHOSPHATASE PP1 (OJ1364E02.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-D05, full insert sequence.
FL= gb:AK063856.1 gb:U31773.1 gb:AK073140.1 gb:AK058806.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1611011/11Serine/threonine protein phosphatase PP1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16080Os.32299.1.S1_at11/113+8845017..8848272Mitochondrial carrier protein, expressed
LOC_Os03g16090Os.14601.1.S1_at11/113+8849242..8854454LIM domain-containing protein, putative, expressed
LOC_Os03g16100OsAffx.3251.1.S1_at11/113+8861912..8862169hypothetical protein
LOC_Os03g16110Os.12164.2.S1_x_at11/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16110Os.12164.1.S1_at11/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16110OsAffx.24898.1.S1_at1/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16120Os.15434.1.S1_at11/113+8871212..8874611expressed protein
LOC_Os03g16120Os.15434.2.S1_x_at10/113+8871212..8874611expressed protein
LOC_Os03g16120Os.15434.2.S1_at8/113+8871212..8874611expressed protein
LOC_Os03g16130Os.50427.1.S1_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16130Os.21451.1.S1_a_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16130Os.21451.3.S1_x_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16140Os.7263.1.S1_at11/113+8881803..8885407digalactosyldiacylglycerol synthase 2, putative, expressed
LOC_Os03g16150Os.56198.1.S1_at11/113+8888314..8891909mannose-1-phosphate guanyltransferase, putative, expressed
LOC_Os03g16150Os.43951.1.S1_at10/113+8888314..8891909mannose-1-phosphate guanyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006470biological_processprotein amino acid dephosphorylation
GO:0000164cellular_componentprotein phosphatase type 1 complex
GO:0000163molecular_functionprotein phosphatase type 1 activity
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12164.1.S1_at--593--6211Chr03:8868236..8868259 (24 bp)
GAGGCTGTCCTGTGGATGCATCTAG
LOC_Os03g16110
Os.12164.1.S1_at--934--3551Chr03:8868253..8868277 (25 bp)
CATCTAGACATCAACGTGCAGGCGT
LOC_Os03g16110
Os.12164.1.S1_at--365--7331Chr03:8868268..8868292 (25 bp)
GTGCAGGCGTTAGGCTTGAAGCAAC
LOC_Os03g16110
Os.12164.1.S1_at--1133--5131Chr03:8868288..8868312 (25 bp)
GCAACATTGGGCTAATTCTACCGGA
LOC_Os03g16110
Os.12164.1.S1_at--742--1011Chr03:8868350..8868374 (25 bp)
AGGTTACTCTTCATGGCAAGTGCCA
LOC_Os03g16110
Os.12164.1.S1_at--992--6311Chr03:8868444..8868468 (25 bp)
GATGAAGTTGCCAATTGACCTGAGG
LOC_Os03g16110
Os.12164.1.S1_at--230--2351Chr03:8868534..8868558 (25 bp)
AAAGCACATGTATCACTTGTATGGA
LOC_Os03g16110
Os.12164.1.S1_at--733--10151Chr03:8868624..8868648 (25 bp)
TATCTTGTTTTCTATAGCGTGCTAA
LOC_Os03g16110
Os.12164.1.S1_at--787--3291Chr03:8868703..8868727 (25 bp)
GAACCTTTAAGCATTTGCGAACTGC
LOC_Os03g16110
Os.12164.1.S1_at--736--10431Chr03:8868771..8868795 (25 bp)
TTATCCTGTAAACTGGACCAGCTTG
LOC_Os03g16110
Os.12164.1.S1_at--808--3471Chr03:8868797..8868821 (25 bp)
CAGGTGCTGCGTGATCTACATTGTA
LOC_Os03g16110
Target Sequence 
GAGGCTGTCCTGTGGATGCATCTAGACATCAACGTGCAGGCGTTAGGCTTGAAGCAACATTGGGCTAATTCTACCGGAGA
AGCCAAATAATATCATATCTAACAGTTGGTCTGGAAGGTTACTCTTCATGGCAAGTGCCAATTTTTTTTCCATTTTCTGT
TATGATGCGTGAAACTATCTTGTAGATGTAGATATATTGATTATGGAAGGATGAAGTTGCCAATTGACCTGAGGCGGTTT
CCTTCTGCAGCCAGGAAAAATCTGAATATGGAGTTTCTGTTTGGTAGTTTCACTATTTAAAAGCACATGTATCACTTGTA
TGGAGGTAACAACTTTACTTATGCAAGCCCGTGTTTTCTGTTGCTTGTAAGCAAAATTGGATGAGTTTTTATCTTGTTTT
CTATAGCGTGCTAATATTGCCAATGGCAACAATTTGCGAACTGCAATTCTAGAATGTACTGGATGATTGAACCTTTAAGC
ATTTGCGAACTGCAATTCTAGANTCTAGAAGTCCTCTGGAAAGGCTAATGAATGGTTTATCCTGTAAACTGGACCAGCTT
GACAGGTGCTGCGTGATCTACATTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12164.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis