Browse Element(s) Details


Os.15434.2.S1_x_at

Description gb:NM_187477.1
DB_XREF= gi:34902039
TID=Os.15434.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.15434 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OJ1364E02.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OJ1364E02.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1612010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16080Os.32299.1.S1_at11/113+8845017..8848272Mitochondrial carrier protein, expressed
LOC_Os03g16090Os.14601.1.S1_at11/113+8849242..8854454LIM domain-containing protein, putative, expressed
LOC_Os03g16100OsAffx.3251.1.S1_at11/113+8861912..8862169hypothetical protein
LOC_Os03g16110Os.12164.2.S1_x_at11/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16110Os.12164.1.S1_at11/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16110OsAffx.24898.1.S1_at1/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16120Os.15434.1.S1_at11/113+8871212..8874611expressed protein
LOC_Os03g16120Os.15434.2.S1_x_at10/113+8871212..8874611expressed protein
LOC_Os03g16120Os.15434.2.S1_at8/113+8871212..8874611expressed protein
LOC_Os03g16130Os.50427.1.S1_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16130Os.21451.1.S1_a_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16130Os.21451.3.S1_x_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16140Os.7263.1.S1_at11/113+8881803..8885407digalactosyldiacylglycerol synthase 2, putative, expressed
LOC_Os03g16150Os.56198.1.S1_at11/113+8888314..8891909mannose-1-phosphate guanyltransferase, putative, expressed
LOC_Os03g16150Os.43951.1.S1_at10/113+8888314..8891909mannose-1-phosphate guanyltransferase, putative, expressed
LOC_Os03g16160OsAffx.25105.1.S1_at11/113+8895670..8896206hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15434.2.S1_x_at--1071--8951Chr03:8872706..8872730 (25 bp)
TGAAATAAGTTTCCCCTACCATGCA
LOC_Os03g16120
Os.15434.2.S1_x_at--889--10651Chr03:8872696..8872720 (25 bp)
TTCCCCTACCATGCAGATGAAGCTT
LOC_Os03g16120
Os.15434.2.S1_x_at--954--5391Chr03:8872678..8872702 (25 bp)
GAAGCTTCTGAATTTGCTGCACGCA
LOC_Os03g16120
Os.15434.2.S1_x_at--976--1071Chr03:8872291..8872315 (25 bp)
AGGGCAGCCGCCAAAAGTTGTTAAT
LOC_Os03g16120
Os.15434.2.S1_x_at--210--8891Chr03:8872148..8872172 (25 bp)
TGAGGAGAACTCAGCCTTGTCTACT
LOC_Os03g16120
Os.15434.2.S1_x_at--1068--2771Chr03:8871955..8871979 (25 bp)
AAGAGCTACGCTCTCACTTAGAGAA
LOC_Os03g16120
Os.15434.2.S1_x_at--1130--2831Chr03:8871897..8871921 (25 bp)
AAGTAATACCACTATCCAGCCAGAT
LOC_Os03g16120
Os.15434.2.S1_x_at--1143--1411Chr03:8871868..8871892 (25 bp)
AGAACGAGACCAGCATTTCATTCCC
LOC_Os03g16120
Os.15434.2.S1_x_at--401--10311Chr03:8871853..8871877 (25 bp)
TTTCATTCCCGCCAGAGTTTGTAAC
LOC_Os03g16120
Os.15434.2.S1_x_at--788--5251Chr03:8871718..8871849 (25 bp)
GAATCTCTCCCTAAAGGATCAGCTC
LOC_Os03g16120
Os.15434.2.S1_x_at--943--1751NONE
ACCTCGCACGCCTATTGAAAGGATA
NONE
Target Sequence 
TGAAATAAGTTTCCCCTACCATGCAGATGAAGCTTCTGAATTTGCTGCACGCAAGGCATTTTCAATGGAAGATAGGGAAA
AACTTGAAAGCCAATTGCATGATATGGCTTTGATGGTTGAGAGGCTAGAGGGCAGCCGCCAAAAGTTGTTAATGGAGATT
GATTCTCAATCATCAGAAATAGAAAAGCTGTTTGAGGAGAACTCAGCCTTGTCTACTTCATACCAAGAAGCTGTAGCTGT
TACAATGCAATGGGAAAACCAGGTAAAAGATTGTCTCAAGCAAAATGAAGAGCTACGCTCTCACTTAGAGAAGTTAAGAC
TTGAGCAAGCTACTCTATTGAAAACAAGTAATACCACTATCCAGCCAGATGGGCAGAACGAGACCAGCATTTCATTCCCG
CCAGAGTTTGTAACTGAGAATCTCTCCCTAAAGGATCAGCTCATCAAAGAACAGAGCAGATCCGAGGGGTTGTCGGCAGA
AATAATGAAACTTTCAGCTGAACTCAGAAAAGCGGTGCAAGCGCAGAATAACCTCGCACGCCTATTGAAAGGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15434.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis