Browse Element(s) Details


OsAffx.3251.1.S1_at

Description tigr:9631.m01564
TID=OsAffx.3251.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1610011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16070Os.9617.1.S1_at6/113+8833684..8838058expressed protein
LOC_Os03g16080Os.32299.1.S1_at11/113+8845017..8848272Mitochondrial carrier protein, expressed
LOC_Os03g16090Os.14601.1.S1_at11/113+8849242..8854454LIM domain-containing protein, putative, expressed
LOC_Os03g16100OsAffx.3251.1.S1_at11/113+8861912..8862169hypothetical protein
LOC_Os03g16110Os.12164.2.S1_x_at11/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16110Os.12164.1.S1_at11/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16110OsAffx.24898.1.S1_at1/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16120Os.15434.1.S1_at11/113+8871212..8874611expressed protein
LOC_Os03g16120Os.15434.2.S1_x_at10/113+8871212..8874611expressed protein
LOC_Os03g16120Os.15434.2.S1_at8/113+8871212..8874611expressed protein
LOC_Os03g16130Os.50427.1.S1_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16130Os.21451.1.S1_a_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16130Os.21451.3.S1_x_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16140Os.7263.1.S1_at11/113+8881803..8885407digalactosyldiacylglycerol synthase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3251.1.S1_at--714--8371Chr03:8861978..8862002 (25 bp)
GGCGTTGCGCTCATTAAAGGAGGCT
LOC_Os03g16100
OsAffx.3251.1.S1_at--909--4631Chr03:8861979..8862003 (25 bp)
GCGTTGCGCTCATTAAAGGAGGCTC
LOC_Os03g16100
OsAffx.3251.1.S1_at--1056--4031Chr03:8861980..8862004 (25 bp)
CGTTGCGCTCATTAAAGGAGGCTCA
LOC_Os03g16100
OsAffx.3251.1.S1_at--41--6691Chr03:8861981..8862005 (25 bp)
GTTGCGCTCATTAAAGGAGGCTCAG
LOC_Os03g16100
OsAffx.3251.1.S1_at--94--10711Chr03:8861982..8862006 (25 bp)
TTGCGCTCATTAAAGGAGGCTCAGC
LOC_Os03g16100
OsAffx.3251.1.S1_at--967--9151Chr03:8861983..8862007 (25 bp)
TGCGCTCATTAAAGGAGGCTCAGCC
LOC_Os03g16100
OsAffx.3251.1.S1_at--720--4572Chr03:8861984..8862008 (25 bp)
GCGCTCATTAAAGGAGGCTCAGCCT
LOC_Os03g16100
OsAffx.3251.1.S1_at--890--4133Chr03:8861985..8862009 (25 bp)
CGCTCATTAAAGGAGGCTCAGCCTG
LOC_Os03g16100
OsAffx.3251.1.S1_at--256--4813Chr03:8861986..8862010 (25 bp)
GCTCATTAAAGGAGGCTCAGCCTGG
LOC_Os03g16100
OsAffx.3251.1.S1_at--462--137Chr09:16716233..16716257 (25 bp)
ATTAAAGGAGGCTCAGCCTGGGCCC
NONE
OsAffx.3251.1.S1_at--8--10497Chr09:16716234..16716258 (25 bp)
TTAAAGGAGGCTCAGCCTGGGCCCC
NONE
Target Sequence 
GGCGTTGCGCTCATTAAAGGAGGCTCAGCCTGGGCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3251.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis