Browse Element(s) Details


Os.32299.1.S1_at

Description gb:AK071979.1
DB_XREF= gi:32982002
TID=Os.32299.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.32299 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative peroxisomal Ca-dependent solute carrier protein (OJ1364E02.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013087F10, full insert sequence.
FL= gb:AK105349.1 gb:AK071979.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1608011/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16050Os.11756.1.S1_at11/113+8820321..8822122Fructose-1,6-bisphosphatase, chloroplast precursor, putative, expressed
LOC_Os03g16050Os.11756.1.S1_s_at11/113+8820321..8822122Fructose-1,6-bisphosphatase, chloroplast precursor, putative, expressed
LOC_Os03g16060Os.49668.1.S1_at11/113+8830385..8833479lipase, putative, expressed
LOC_Os03g16070Os.9617.1.S1_at6/113+8833684..8838058expressed protein
LOC_Os03g16080Os.32299.1.S1_at11/113+8845017..8848272Mitochondrial carrier protein, expressed
LOC_Os03g16090Os.14601.1.S1_at11/113+8849242..8854454LIM domain-containing protein, putative, expressed
LOC_Os03g16100OsAffx.3251.1.S1_at11/113+8861912..8862169hypothetical protein
LOC_Os03g16110Os.12164.2.S1_x_at11/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16110Os.12164.1.S1_at11/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16110OsAffx.24898.1.S1_at1/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16120Os.15434.1.S1_at11/113+8871212..8874611expressed protein
LOC_Os03g16120Os.15434.2.S1_x_at10/113+8871212..8874611expressed protein
LOC_Os03g16120Os.15434.2.S1_at8/113+8871212..8874611expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32299.1.S1_at--654--4531Chr03:8847685..8847709 (25 bp)
GCCCGAGTACTGCAAAGTGGTCCCA
LOC_Os03g16080
Os.32299.1.S1_at--183--1091Chr03:8847700..8847724 (25 bp)
AGTGGTCCCAAGTGTTGGCATTGTT
LOC_Os03g16080
Os.32299.1.S1_at--658--6911Chr03:8847733..8847757 (25 bp)
GTATGAGACGCTGAAGTCCATCCTC
LOC_Os03g16080
Os.32299.1.S1_at--174--5331Chr03:8847745..8847769 (25 bp)
GAAGTCCATCCTCACGGAACTGGCA
LOC_Os03g16080
Os.32299.1.S1_at--699--6551Chr03:8847776..8847800 (25 bp)
GATTAGCTGTCCAACATTTGTCACG
LOC_Os03g16080
Os.32299.1.S1_at--1152--7091Chr03:8847795..8847819 (25 bp)
GTCACGCTTGACAATTTTGATGTTT
LOC_Os03g16080
Os.32299.1.S1_at--1066--3431Chr03:8847946..8847970 (25 bp)
CAGATTTTCTTGTAGTGCATGGTAA
LOC_Os03g16080
Os.32299.1.S1_at--245--5571Chr03:8848087..8848111 (25 bp)
GAAAGATGGCCTCCAAGATGATCTG
LOC_Os03g16080
Os.32299.1.S1_at--1158--711Chr03:8848119..8848143 (25 bp)
ATGTTGTCCTAGTGAGCTTATTACA
LOC_Os03g16080
Os.32299.1.S1_at--119--111Chr03:8847933..8848168 (25 bp)
ATTCATAAGTGAGTTCGGCTACATT
LOC_Os03g16080
Os.32299.1.S1_at--358--8431Chr03:8848178..8848202 (25 bp)
GGCCTTGTCATTCAAATTTCCTGGT
LOC_Os03g16080
Target Sequence 
GCCCGAGTACTGCAAAGTGGTCCCAAGTGTTGGCATTGTTTTTATGACGTATGAGACGCTGAAGTCCATCCTCACGGAAC
TGGCATCAGATGATTAGCTGTCCAACATTTGTCACGCTTGACAATTTTGATGTTTGGGCCAGAATAACACTTGAGGCTGA
TTAGAGCGAGAAAAATGACTTTGTAGCATATGTTAGGATNTAGATGGTACTAGGTTTTTAAGTTTATAATATCATNGGAA
TGGAAGGATATTCATATGGTTACAGATTTTCTTGTAGTGCATGGTAAAAGAAGAGCCNCTGCCATAGGTCNTCAAATNTC
TGTCCACCAGTTTTAGTGTATGNTAACAGTTTCAGTTTTGTAATGNTACATGAGGCCATTGTCTTCAGCNTCTACAATAC
TATTGAAAGATGGCCTCCAAGATGATCTGNTTATCNATGTTGTCCTAGTGAGCTTATTACAATTCATAAGTGAGTTCGGC
TACATTATTGNGAATGGCCTTGTCATTCAAATTTCCTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32299.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis