Browse Element(s) Details


Os.9617.1.S1_at

Description gb:AK072790.1
DB_XREF= gi:32982813
TID=Os.9617.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9617 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023142F14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023142F14, full insert sequence.
FL= gb:AK072790.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g160706/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16010Os.10798.1.S1_at11/113+8806805..8812628protein kinase, putative, expressed
LOC_Os03g16010Os.26733.3.S1_x_at3/113+8806805..8812628protein kinase, putative, expressed
LOC_Os03g16020Os.22731.1.S1_at11/113+8812766..881352917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16020Os.57467.1.S1_x_at6/113+8812766..881352917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16020Os.37773.1.S1_x_at4/113+8812766..881352917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16030Os.37773.1.S1_x_at11/113+8813884..881465417.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16030Os.37773.1.S1_at11/113+8813884..881465417.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16030Os.57467.1.S1_x_at5/113+8813884..881465417.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16040Os.22730.1.S1_at11/113+8816812..881767617.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16040Os.37773.1.S1_x_at2/113+8816812..881767617.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16040Os.57467.1.S1_x_at1/113+8816812..881767617.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16050Os.11756.1.S1_at11/113+8820321..8822122Fructose-1,6-bisphosphatase, chloroplast precursor, putative, expressed
LOC_Os03g16050Os.11756.1.S1_s_at11/113+8820321..8822122Fructose-1,6-bisphosphatase, chloroplast precursor, putative, expressed
LOC_Os03g16060Os.49668.1.S1_at11/113+8830385..8833479lipase, putative, expressed
LOC_Os03g16070Os.9617.1.S1_at6/113+8833684..8838058expressed protein
LOC_Os03g16080Os.32299.1.S1_at11/113+8845017..8848272Mitochondrial carrier protein, expressed
LOC_Os03g16090Os.14601.1.S1_at11/113+8849242..8854454LIM domain-containing protein, putative, expressed
LOC_Os03g16100OsAffx.3251.1.S1_at11/113+8861912..8862169hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9617.1.S1_at--497--271Chr03:8834077..8834101 (25 bp)
ATAGTGATGCTTCACGGCAGGCGCC
LOC_Os03g16070
Os.9617.1.S1_at--639--2711Chr03:8834040..8834064 (25 bp)
AAGCAGGTGTGCACGCATCGCAAGA
LOC_Os03g16070
Os.9617.1.S1_at--502--4611Chr03:8833910..8833934 (25 bp)
GCGAGCCTAGCTTCCTGTGATAAAA
LOC_Os03g16070
Os.9617.1.S1_at--502--6811Chr03:8833859..8833883 (25 bp)
GTTTTCTTCTGTAACTCGAGTTGCG
LOC_Os03g16070
Os.9617.1.S1_at--565--591Chr03:8833822..8833846 (25 bp)
ATGCCATGATCCATATGCGACTCAC
LOC_Os03g16070
Os.9617.1.S1_at--140--2951Chr03:8833716..8833740 (25 bp)
AAGGCTCATCTCAGTGCTTAGCTAC
LOC_Os03g16070
Os.9617.1.S1_at--388--1291Chr03:8833669..8833693 (25 bp)
AGATCCTCGCAAAGCTTCTGTCACT
NONE
Os.9617.1.S1_at--551--1791Chr03:8833641..8833666 (25 bp)
ACCCCTTCAGAAATGGCACCGATGT
NONE
Os.9617.1.S1_at--396--1791Chr03:8833627..8833648 (22 bp)
ACCGATGTTGTGATACGTTTGTCCA
NONE
Os.9617.1.S1_at--308--6871NONE
GTTTGTCCACTCTCTGTACATTTCT
NONE
Os.9617.1.S1_at--1095--7571Chr03:8833580..8833603 (24 bp)
GGGCTGAAAGCCTGGAACTGCATTT
NONE
Target Sequence 
ATAGTGATGCTTCACGGCAGGCGCCCTACCAGGACGCAAGCAGGTGTGCACGCATCGCAAGAGCACGCATCCCTCGCTGA
CCATAAGCTCAACAAGATCATGGCAGCTAGTCAAGNTAGAGCTCAGGCAAGCTATGTGCCACACCGGCCNCCGCTATCTC
CTGTAGGGCGAGCCTAGCTTCCTGTGATAAAAATGTATGTTTTTCNTTTGTTTCTTTTCNGTTTTCTTCTGTAACTCGAG
TTGCGTCNGTGGAATCTTATGCCATGATCCATATGCGACTCACATCGAAATGTGATGAATCTTATGGAATCGGCTTTAGC
GGGGTAGCTAACTGTACATGTAAAATGACTAGGTGTGTTGCTGCAAGGCTCATCTCAGTGCTTAGCTACCCNTTTTTATA
TGCAAGCAAANCAGATCCTCGCAAAGCTTCTGTCACTCAACCCCTTCAGAAATGGCACCGATGTTGTGATACGTTTGTCC
ACTCTCTGTACATTTCTGGGGGCTGAAAGCCTGGAACTGCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9617.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis