Browse Element(s) Details


Os.22730.1.S1_at

Description gb:AK069547.1
DB_XREF= gi:32979571
TID=Os.22730.1
CNT=33
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.22730 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) shock protein, low molecular weight (OJ1364E02.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023021P13, full insert sequence.
FL= gb:AK069547.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1604011/1117.4 kDa class I heat shock protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15990OsAffx.25104.1.S1_at11/113+8794075..8796397hydroxyproline-rich glycoprotein family protein, putative
LOC_Os03g16000Os.34102.1.S1_a_at10/113+8798197..8803386Variant SH3 domain containing protein, expressed
LOC_Os03g16010Os.10798.1.S1_at11/113+8806805..8812628protein kinase, putative, expressed
LOC_Os03g16010Os.26733.3.S1_x_at3/113+8806805..8812628protein kinase, putative, expressed
LOC_Os03g16020Os.22731.1.S1_at11/113+8812766..881352917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16020Os.57467.1.S1_x_at6/113+8812766..881352917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16020Os.37773.1.S1_x_at4/113+8812766..881352917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16030Os.37773.1.S1_x_at11/113+8813884..881465417.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16030Os.37773.1.S1_at11/113+8813884..881465417.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16030Os.57467.1.S1_x_at5/113+8813884..881465417.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16040Os.22730.1.S1_at11/113+8816812..881767617.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16040Os.37773.1.S1_x_at2/113+8816812..881767617.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16040Os.57467.1.S1_x_at1/113+8816812..881767617.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16050Os.11756.1.S1_at11/113+8820321..8822122Fructose-1,6-bisphosphatase, chloroplast precursor, putative, expressed
LOC_Os03g16050Os.11756.1.S1_s_at11/113+8820321..8822122Fructose-1,6-bisphosphatase, chloroplast precursor, putative, expressed
LOC_Os03g16060Os.49668.1.S1_at11/113+8830385..8833479lipase, putative, expressed
LOC_Os03g16070Os.9617.1.S1_at6/113+8833684..8838058expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0009408biological_processresponse to heat
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22730.1.S1_at--121--1291Chr03:8817073..8817097 (25 bp)
AGATCTCCGGCTAGAGCCCCGTTTG
LOC_Os03g16040
Os.22730.1.S1_at--24--1331Chr03:8817061..8817085 (25 bp)
AGAGCCCCGTTTGTTTATTCTGCTG
LOC_Os03g16040
Os.22730.1.S1_at--790--3831Chr03:8817039..8817063 (25 bp)
CTGCTTCTCCTCAATGCTGCAATTG
LOC_Os03g16040
Os.22730.1.S1_at--33--3851Chr03:8817023..8817047 (25 bp)
CTGCAATTGATCTCCTCCTTTGGTA
LOC_Os03g16040
Os.22730.1.S1_at--211--9271Chr03:8817011..8817035 (25 bp)
TCCTCCTTTGGTACTTTGCTTGTGT
LOC_Os03g16040
Os.22730.1.S1_at--76--7011Chr03:8817001..8817025 (25 bp)
GTACTTTGCTTGTGTCGTGAGGGAC
LOC_Os03g16040
Os.22730.1.S1_at--599--8711Chr03:8816989..8817013 (25 bp)
TGTCGTGAGGGACACAGTCCAAAAT
LOC_Os03g16040
Os.22730.1.S1_at--517--6811Chr03:8816945..8816969 (25 bp)
GTTTATGAATGTGTGGTCTCCTCCA
LOC_Os03g16040
Os.22730.1.S1_at--1146--8651Chr03:8816934..8816958 (25 bp)
TGTGGTCTCCTCCAAGGGTCCCAAA
LOC_Os03g16040
Os.22730.1.S1_at--452--7671Chr03:8816919..8816943 (25 bp)
GGGTCCCAAATGTGTTTGTCTCCTA
LOC_Os03g16040
Os.22730.1.S1_at--66--6871Chr03:8816906..8816930 (25 bp)
GTTTGTCTCCTATGCGTTTATGTAC
LOC_Os03g16040
Target Sequence 
AGATCTCCGGCTAGAGCCCCGTTTGTTTATTCTGCTGCTTCTCCTCAATGCTGCAATTGATCTCCTCCTTTGGTACTTTG
CTTGTGTCGTGAGGGACACAGTCCAAAATGTGTGTGATATGATCATGTGTTTATGAATGTGTGGTCTCCTCCAAGGGTCC
CAAATGTGTTTGTCTCCTATGCGTTTATGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22730.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis